Corynebacterium appendicis: CAPP_01425
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Entry
CAPP_01425 CDS
T09384
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
capp
Corynebacterium appendicis
Pathway
capp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
capp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAPP_01425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
capp03021
]
CAPP_01425 (rpoB)
03400 DNA repair and recombination proteins [BR:
capp03400
]
CAPP_01425 (rpoB)
Enzymes [BR:
capp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAPP_01425 (rpoB)
Transcription machinery [BR:
capp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAPP_01425 (rpoB)
DNA repair and recombination proteins [BR:
capp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAPP_01425 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WJY60230
LinkDB
All DBs
Position
272259..275783
Genome browser
AA seq
1174 aa
AA seq
DB search
MRRVRAPREVLEGPILAVSRQTKSVATIPGAPERYSFAKIDEPIALPGLLDVQLESFAWL
VGTPEWRERQAEERGDDARITSGLEDILEEISPIQDYSGNMSLSLSEPRFEDVKYTIDEC
KDKDINYSAPLYVTAEFINNDTQEIKSQTVFIGDFPLMTDKGTFIVNGTERVIVSQLVRS
PGVYFDETIDKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG
WTEQQIKDRFGFSEIMMSTLENDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLENAFFR
AKRYDLARVGRYKVNRKLGLGGDHEGLMTLTEEDIATTLEYLVRLHAGEREMTSPEGTVI
PINTDDIDHFGNRRLRTVGELVQNQVRVGLSRMERVVRERMTTQDAEAITPTSLINVRPV
SAAIREFFGTSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRM
CPIETPEGPNIGLIGALSSYARVNPFGFIETPYQKVIDGKITEEIDYLTADEEDRYAIAE
AATEHDKDMNITAERIEVRLKDGDIGVVGAKDVDYVDISPRQMVSVATAMIPFLEHDDAN
RALMGANMQKQAVPLLRSEAAYVATGTELRAAYDAGDIVIAKTAGVVEDVTGDVITIMDD
EGQRESYLLRTFERTNQGTCYNQTPIVSTGDRVEAGQVIADGPGTKNGEMALGTNLLVAF
MPWEGHNYEDAIILNQRVVEQDILTSVHIEEHEIDARDTKLGAEEITREIPNVSEDVLKD
LDERGIIRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE
TGKVIAVRRFSREDDDDLSPGVNEMIRVYVAQKRKIQDGDKMAGRHGNKGVVGKILPEED
MPFMADGTPVDIILNTHGVPRRMNIGQVLEVHLGWLAKAGWTVNPDDPANAKLLETLPEQ
LYDVPPESLTATPVFDGATNEEIAGLLANTKPNRDGDVMVDGDGKTVLFDGRSGEPFKYP
ISVGYMYMLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAA
YTLQELLTIKSDDVVGRVKVYEAIVKGDNIPDPGIPESFKVLLKELQSLCLNVEVLSTDG
TPMELSGDDDEYDQAGSSLGINLSRDEGSAADTA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgtgtacgggccccgcgtgaggtgctggaaggacccatcttggcagtctcccgc
cagaccaagtcagtggccacgattcccggagctccggagcgctactcgttcgcgaagatc
gacgagccgattgcgcttcctgggctccttgatgttcagttagaatccttcgcttggctc
gtcggcacgcctgaatggcgtgagcgtcaggcagaagagcgcggcgacgacgcccgcatc
acgtccggtctcgaggacatcctggaagagatctctccgatccaggactactcgggcaac
atgagcttgtctctgtccgagccgcgcttcgaggatgtcaagtacaccatcgacgagtgc
aaagacaaggacatcaactactccgcaccgctgtacgtgaccgcggagttcattaacaac
gacacccaggagatcaagtctcagaccgtcttcatcggcgacttcccgctgatgacggac
aagggcacgttcatcgtcaacggcaccgagcgtgtcattgtctcccagctggtgcgttcc
ccgggcgtctacttcgacgagacgatcgacaagtccaccgagcgtccgctccactccgtg
aaggtcatcccgtcgcgtggtgcatggctggagttcgacgtcgataagcgcgacaccgtc
ggtgtccgcatcgaccgcaagcgccgccagccggtgaccgtcctgctgaaggccctcggc
tggaccgagcagcagatcaaggaccgcttcggcttctccgagatcatgatgtccacgctg
gagaacgacggcgtggccaacaccgacgaggcactgctggagatctaccgcaagcagcgc
ccgggcgagcagccgacccgcgacctcgcgcagtccctgctcgagaacgccttcttccgc
gcgaagcgctacgacctcgcacgcgtcggccgctacaaggtcaaccgcaagctcggcctc
ggcggcgaccacgagggtctgatgaccctgaccgaagaggacatcgccaccacgctcgag
tacctcgtgcgcctgcacgccggtgagcgcgagatgacctctccggagggcaccgtcatc
ccgatcaacaccgacgacatcgaccacttcggcaaccgccgcctgcgcaccgtgggcgag
ctggtgcagaaccaggtccgcgtcggcctgtcccgcatggagcgtgtcgtgcgcgagcgc
atgaccacgcaggacgctgaggcgatcaccccgacctccctgatcaacgttcgcccggtc
tccgcggcgatccgcgagttcttcggcacctcccagctgtcgcagttcatggaccagaac
aactccctgtccggcctgacccacaagcgccgcctgtccgcgctcggcccgggcggcctg
tcccgtgagcgcgccggcatcgaggtccgagacgttcacccgtcccactacggccgcatg
tgcccgattgagactcctgagggcccgaacatcggcctgattggcgcactgtcttcttac
gcacgtgtgaacccgttcggtttcatcgagacgccgtaccagaaggtcatcgacggcaaa
attactgaggagatcgactacctcaccgccgacgaggaggaccgctacgcgattgccgag
gcggccaccgagcacgacaaggacatgaacatcacggccgagcgcatcgaggtgcgcctc
aaggacggcgatatcggtgttgtgggtgccaaggacgtcgactacgtcgacatctccccg
cgccagatggtctccgtcgctacggcgatgattccgttcctcgagcacgacgacgctaac
cgcgcgctcatgggtgcgaacatgcagaagcaggcagtgccgctgctgcgttccgaggcc
gcgtacgtggccaccggcaccgagctgcgcgccgcgtacgacgcgggcgacatcgtcatc
gccaagaccgccggtgtcgtcgaggacgtcaccggcgatgtcatcaccatcatggacgac
gagggtcagcgcgagtcgtacttgctgcgcacgttcgagcgcaccaaccagggcacctgc
tacaaccagaccccgatcgtgtccacgggcgaccgcgttgaggctggccaggtcatcgcc
gatggcccgggcaccaagaatggcgagatggcgctgggcaccaacctgctcgtcgccttc
atgccgtgggagggccacaactacgaggacgccatcatcctcaaccagcgcgtggtggag
caggacatcctgacctccgtgcacatcgaggagcacgagatcgacgcccgcgacaccaag
ctgggcgccgaggaaatcacccgcgagatcccgaacgtctccgaggacgtgctgaaggac
ctcgatgagcgcggcatcattcgcatcggtgcagatgtccgcgacggcgacatcctcgtc
ggcaaggtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaaggcccgcgaggtccgcgacacctccctgaaggtgccgcacggcgag
accggcaaggtgattgctgtccgccgcttctcccgcgaggacgacgacgatctgtcgccg
ggcgtcaacgagatgatccgcgtctacgtcgcccagaagcgcaagatccaggacggcgac
aagatggccggccgccacggtaacaagggtgtcgtgggcaagatcctccccgaggaggat
atgccgttcatggctgacggcaccccggtggacatcatcctgaacacccacggtgtgccg
cgccgtatgaacatcggtcaggtcctcgaggtgcacctcggttggctggctaaggctggc
tggaccgtcaacccggatgatccggccaacgcgaagttgctggagacgcttccggagcag
ctttacgacgttccgccggagtcgctgaccgccaccccggtgttcgacggcgccaccaac
gaggagatcgccggccttttggccaacaccaagccgaaccgcgacggcgacgtcatggtg
gacggcgacggcaagaccgtgcttttcgacggccgctccggcgaaccgttcaagtacccg
atctccgtcggctacatgtacatgctcaagctgcaccacctggtggacgagaagattcac
gcccgctccaccggcccgtactccatgattacccagcagccgctgggtggtaaggcacag
ttcggtggccagcgcttcggcgagatggaggtgtgggcaatgcaggcgtatggcgccgcc
tacaccctgcaggagctgctgaccatcaagtccgatgacgttgtgggccgcgtgaaggtg
tacgaggcgattgtcaagggcgacaacatcccggatccgggcatcccggagtccttcaag
gtgttgctcaaggagctgcagtcgctgtgcctcaacgtcgaggtgctgtccaccgacggt
actccgatggagctgtccggcgacgacgacgaatacgaccaggcaggatcctcgctggga
atcaacctgtcccgcgacgagggttccgcagccgacacggcataa
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