Corynebacterium appendicis: CAPP_04625
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Entry
CAPP_04625 CDS
T09384
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
capp
Corynebacterium appendicis
Pathway
capp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAPP_04625 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capp03019
]
CAPP_04625 (deaD)
03009 Ribosome biogenesis [BR:
capp03009
]
CAPP_04625 (deaD)
Enzymes [BR:
capp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAPP_04625 (deaD)
Messenger RNA biogenesis [BR:
capp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAPP_04625 (deaD)
Ribosome biogenesis [BR:
capp03009
]
Prokaryotic type
rRNA helicases
CAPP_04625 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJY60851
LinkDB
All DBs
Position
908325..910484
Genome browser
AA seq
719 aa
AA seq
DB search
MSIDDNAAEDQQANTPAETENTDGSNADQVQSSHEAQTQGETENVSDAAGTAEENGNVNN
TGAADEAAEQNNNENPVEGSAEVATGNVNENSAEKDGGKGTEEASSSTGFDALDLSGDLL
TAIKKVGFEEPSPIQAQTIPLLLEGRDVVGLAQTGTGKTAAFALPVLAQIDTKARHPQAL
VLAPTRELALQVSDSFQSFADHLGGVSVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVID
HLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNDKQVALFSATMPNGIRRIS
KQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEFDGMIVFVRTKHET
EEIAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVL
NYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIEKVTGAEIEEMDLPTVDE
VNVSRMAKFSDSITESLENDQMDLFRSLVRSYSADHDVPMEDIAAALAAQTSGDEFLMKE
PPKDKRDRRDREKWDRDDRRDRGRGRDRRDRDDRGGRSRYQNDDPNFDTYRLDVGKRQHV
RPGAIVGALANEGGLTNRDFGRITIGGDFTLVELPKNLDPAVLDRLTDTRISGQLINIQR
DHGAPPRDRRGGRGGYRKRDDDRGYRGGGRGRGGHGSRDRDDRGGRGGRGGGRDRGWRD
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgatgacaacgccgctgaagaccagcaggcgaataccccggctgagacggaa
aacaccgacggttcgaacgcggatcaggtgcagtccagccacgaggcgcagacgcagggc
gaaacggagaatgtttcggacgctgcaggcactgcagaagagaatgggaacgtgaacaac
acaggggccgcagacgaagctgcggagcagaacaacaatgagaacccggtcgaaggttcg
gccgaggtcgcgaccgggaatgtgaacgagaattccgcagagaaagacggcggaaagggg
acagaagaggcgtcgtcaagcactggcttcgacgcgcttgacctgtcgggcgatttgctg
accgcgatcaagaaggtcggcttcgaggagccgtccccgatccaggcgcagacgatcccg
ctgctgctggaaggccgcgacgtggtcggcctcgcgcagacgggtacgggcaagacggcg
gcattcgcgctgccggtgctcgcccagatcgacacgaaggcgcgccacccgcaggcgctc
gtgctcgcgccgacgcgtgagctcgcgctgcaggtgtccgattctttccagtccttcgcc
gaccacttgggtggcgtttcggtgctgccgatctacggcggccaggcgtacggcatccag
ctgtctggtctgcgccgcggcgcacaggtaatcgtgggcaccccgggccgcgtcatcgac
cacctggagaagggctcgctggacatttccaacctgcgcttcctcgtgctcgacgaagcg
gacgagatgctcaacatgggcttccaggaagacgtcgagcgcatcctcgaagacaccccg
aacgacaagcaggtcgcactgttctccgcgacgatgccgaatggcatccgccgcatttcg
aagcagtacttgaacgacccggcagaggtcacggtcaagtccgagacgcgcacgaacacg
aatatcacccagcgctacctgttcaccgcgcaccgcaacaagctggacgcgatcacgcgc
atcctcgaggtcaccgaattcgacggcatgatcgtcttcgtgcgcaccaagcacgagacc
gaagagatcgccgagaagctccgcgcgcgcggattctccgccgccgcgatcaacggcgac
atcgcccagcagcagcgcgagcgcacggtcgaccagcttcgcgacgggcgcctggacatc
ctcgtcgccaccgacgtcgccgcgcgcggtctggacgtcgagcgcatctcgcacgtgctc
aactacgacatcccgaacgacacggaaagctacgtccaccgcatcggccgcaccggccgc
gcaggccgcacgggcgaggcgatcctgttcgtcaccccgcgcgagcgccgcatgctgcgc
tccatcgaaaaggtcaccggcgccgagatcgaggagatggacctgcccaccgtggacgag
gtcaacgtctcccgcatggccaagttctccgactccatcaccgagtcgctggagaacgac
cagatggacctcttccgcagcctggtgcgcagctactccgccgaccacgacgtgccgatg
gaggacatcgccgccgcgctcgccgcgcagacctccggcgacgagttcctcatgaaggag
ccgccgaaggacaagcgcgaccgccgcgaccgcgagaagtgggaccgcgacgaccgccgc
gaccgcgggcggggacgcgaccgccgcgaccgggatgaccgcgggggacgcagccgttat
cagaacgacgacccgaacttcgacacctaccgcctggatgtgggcaagcgacagcacgtc
cgcccgggcgcgatcgtcggcgccctggccaacgagggcggcctgaccaaccgcgatttc
ggccgcatcacaatcggcggcgacttcacgctcgtcgagctgccgaagaacctcgacccg
gccgtcctcgaccgcctcaccgacacgcgcatctccggccagctgatcaatatccagcgc
gaccacggcgcaccgccgcgcgatcgtcgcggtggacgcggcggctaccgcaagcgcgac
gacgaccgcggctaccgcggcggcggacgcggccggggcggtcatggcagccgcgaccgc
gacgaccgtggtggacgtggcggccgcggcggcggacgagaccgcggctggcgcgactag
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