Capnocytophaga sp. H2931: CGC52_09510
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Entry
CGC52_09510 CDS
T05889
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
capq
Capnocytophaga sp. H2931
Brite
KEGG Orthology (KO) [BR:
capq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
capq03009
]
CGC52_09510
Enzymes [BR:
capq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CGC52_09510
Ribosome biogenesis [BR:
capq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CGC52_09510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
PCMT
Cons_hypoth95
TRAM
PrmA
Methyltransf_11
N6_N4_Mtase
UPF0020
Methyltrans_SAM
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ATA75633
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All DBs
Position
complement(2235337..2236749)
Genome browser
AA seq
470 aa
AA seq
DB search
MSRKNKNIIFENVEVIDAGAKGKSVAKAPDGRVIFLSDAIPGDVVDVQTTKKRTAYFEGF
VIKFHKKSDKRTEPVCSHFGYCGGCKWQNMSYQHQLFYKQKEVENNLKRLGRIEIPEMQP
ILGVENPYFYRNKMEFSFSDTRWLTPEEIKKVETIDNRNGLGFHISGAWDKILDIDTCYL
QEDPSNEIRLKIKQFAIENEMPFYSPRQQTGFLRSMMIRITSIGEIMLVIQFFEENRKMR
EQLLDFIIESFPQITSLQYIINGKQNDSIYDQEVICYKGRDCIYEEMEGLRFKINAKSFY
QTNSKQAYNLYKVARDFAELKGNELVYDLYTGTGTIALFVAQKAKKVIGVEAVPEAIADA
KDNAKNNNISNVSFFVGDMKNVFNEAFIEENGTPDVIITDPPRDGMHKDVVTQILSIAPP
KVVYVSCNSATQARDLALMDAMYKVTKVQAVDMFPQTHHVENVVLLEKRI
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaaaaaacaaaaatatcatattcgaaaacgttgaagtaattgatgcaggggct
aaaggaaaaagcgttgcaaaagctcctgatggacgcgttatattcttgtcggatgctatt
cctggagatgttgttgatgtacaaaccaccaagaaaagaactgcttattttgagggattt
gttatcaagtttcataaaaaatcggacaaacgcactgagccggtctgttcgcattttggt
tattgtggtggatgcaaatggcagaatatgagctatcaacatcaactattctacaaacaa
aaggaggtagaaaacaatctgaaacgtttaggacgcattgaaattcctgaaatgcaacct
attttaggggttgaaaatccgtatttttaccgtaataaaatggaattctctttttctgac
actcgttggctgacccctgaagaaatcaaaaaagtggaaacgattgacaatcgcaacgga
ttaggatttcatatctcaggtgcatgggacaaaattttggatattgacacatgttacctg
caagaagacccttccaatgaaatcagactaaaaataaaacagtttgctattgaaaacgag
atgcctttttacagccctcgtcagcaaacaggttttctgcgttcaatgatgattcgcatt
acttcgattggggaaattatgctcgttattcagtttttcgaagaaaacaggaaaatgcga
gagcaattgttagacttcataattgaaagtttcccacaaatcacctccttgcagtatatc
attaacggaaagcaaaacgattcaatttatgaccaagaggtgatatgctataaaggtcgt
gattgcatctacgaagaaatggaaggattgcgattcaaaatcaatgctaaatcgttttat
cagaccaattcgaaacaggcatataacctctacaaagtagcacgtgattttgcggaattg
aaaggtaatgaattggtgtatgatttgtacactggtacgggaaccattgctttgtttgtt
gcccaaaaagcaaaaaaagtgattggtgttgaagctgttccagaagcgattgccgacgct
aaagataatgctaaaaacaacaatatcagcaatgtttcattttttgtgggagatatgaaa
aatgtttttaacgaagcatttatagaggaaaatggcacacccgatgttattatcaccgat
ccaccacgtgatggaatgcacaaagatgttgttactcaaattttaagcattgcacctcca
aaagtggtgtatgtaagttgcaatagtgcaacccaagctcgtgatttagctctaatggat
gcaatgtacaaagtaactaaagtacaagcagtggatatgttccctcaaacgcatcatgtt
gaaaatgtggttctattggaaaaaagaatatag
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