Capnocytophaga sp. H2931: CGC52_10245
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Entry
CGC52_10245 CDS
T05889
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
capq
Capnocytophaga sp. H2931
Pathway
capq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC52_10245 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capq03019
]
CGC52_10245 (recQ)
03400 DNA repair and recombination proteins [BR:
capq03400
]
CGC52_10245 (recQ)
Enzymes [BR:
capq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC52_10245 (recQ)
Messenger RNA biogenesis [BR:
capq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC52_10245 (recQ)
DNA repair and recombination proteins [BR:
capq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGC52_10245 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
ATA75767
LinkDB
All DBs
Position
complement(2438624..2440813)
Genome browser
AA seq
729 aa
AA seq
DB search
MELAKNDLQSALKHYFGFDSFKGHQQEIIQSVINKENTFVIMPTGGGKSLCYQLPALVLE
GTAIVISPLIALMKNQVDAIRGVSSTDSVAHVLNSSLTKGEIREVMDDISSKKTKLLYVA
PESLIKDEYANFLKTIPISFVAVDEAHCISEWGHDFRPEYRNIRTIIDRLGNGIPVVALT
ATATPKVQEDILKNLGMSEANVFKSSFNRPNLYYEVRPKTKNVDTDIIRFVKQNSKKSGI
IYCLSRKKVEELAQMLQVNGITAVPYHAGLDAKTRAKHQDMFLMEEVEVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMVGKPIAEQ
EIGQALLQDIVAYAETSSSRRKFILHYFGEEFDEVNGEGANMDDNVRYPKTKIEAKDDVV
KLLNVILSTKQKFKAKELVNVLVGKVSALIKSHKIDEQAFFGIGKEKDDLYWMALLRQVM
VNGLIYKDIESYGVMFVTEKGKDFLKNVPSFMMTEDHVYEEEPEENNNSSSGVADEVLLG
MLKDLRKKVAKKKGVPPFVVFQDPSLEDMALKYPITISELTNVHGVGDGKAKKYGAEFVE
LIARYVKDNDILRADDLIVRTTGSNSSLKLYIIQNVDRKLPLPDIAKAKGLEMDEFLKEL
EQIVYSGTKLDINYWVDEIFDEEQQEELHDYFMEAESDKISIASKEFDGDYEDDELRIYR
IKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaattagctaaaaatgatttacagagtgctctaaagcattattttgggtttgatagt
tttaaaggacatcaacaagaaataatacaaagtgtcatcaacaaagaaaatactttcgtt
attatgcccaccggtggtgggaaatctttgtgttatcaacttcctgccttggttttagaa
ggtacagctatcgtaatttctcctttgattgcattgatgaaaaaccaagtagatgccatt
cgtggagtttcgtcgaccgatagtgtggctcacgttctaaattcatctttaacaaaaggc
gaaatccgagaagttatggacgacatcagtagcaaaaaaactaaattactttatgttgct
ccagaatcattaatcaaagacgaatatgctaacttcttaaaaaccataccaatatctttt
gttgccgtggacgaggctcattgtatctcagaatggggacatgatttcagacctgaatat
agaaacatacgaaccatcattgaccgtttaggaaatggcatccctgtagtagctctgaca
gccaccgcaacacctaaagttcaggaagacatcttgaaaaacttgggtatgtccgaggca
aatgtatttaaatcatcgttcaaccgacctaatttatattacgaagtacgtccaaaaacc
aaaaatgtggacactgacattatccgctttgtgaaacaaaacagcaaaaaatcgggaatt
atttactgtttgagtagaaaaaaagtggaagaattggctcaaatgctacaagtgaatggt
atcaccgccgttccgtatcacgcaggattagatgccaaaacacgtgccaaacatcaggat
atgtttttgatggaagaagtggaagtggttgtcgcaaccatcgctttcggtatgggaatc
gataaacctgatgttcgttttgtgattcaccatgacattccaaaaagcatcgaaagttac
taccaagaaacgggacgtgctggacgtgatggaggcgaaggacattgcttggctttctat
tcctataaggatgttgaaaaattagagaaattcatggtcggcaaacccatcgctgaacaa
gaaattggacaggctctgctgcaagatatcgttgcttatgccgaaacctcaagttcaaga
cgtaaattcatactccattattttggggaagaatttgacgaagtaaatggtgaaggtgct
aatatggatgataacgtccgctatccaaagactaaaattgaggccaaagatgatgtggtt
aaattactaaatgttatcctttctaccaaacaaaaattcaaggctaaagaattggttaat
gtcctagttgggaaagtaagcgcattgattaaatctcataaaattgatgaacaggcattc
tttggtattggaaaagaaaaagatgatctctactggatggctttattgcgacaggttatg
gttaatggacttatatacaaggatatagaaagctatggagtcatgtttgtcactgaaaaa
ggaaaagattttttaaaaaacgttccttcatttatgatgacagaagaccatgtttacgag
gaagaacctgaggaaaataacaattcgagtagcggagtagctgacgaagtgcttctgggt
atgctcaaagatttgcgcaagaaagtagctaagaagaaaggagtacctccttttgtagta
ttccaagatccttcgttagaggatatggcgttgaaataccctatcacaatttcagaactt
actaacgttcacggtgttggagatggaaaagccaaaaaatacggtgctgaatttgtagaa
cttatcgccagatatgtcaaagataacgacatcttacgagctgatgacctgatcgttcgt
acaacaggatccaattcatcgctaaaactgtatatcatccaaaatgttgaccgaaaacta
ccattacccgacattgcaaaggcaaagggcttggagatggacgaattcctgaaagaatta
gaacaaatcgtttacagtggcacgaaactggacatcaactattgggttgacgaaatcttt
gatgaagaacaacaagaagagttgcacgactatttcatggaggcggaatcggataaaatt
tcgatcgcatcgaaagaatttgacggtgattatgaagatgacgaactacgaatctatcga
attaaatttattagtgaagtagccaattag
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