Capnocytophaga sp. H2931: CGC52_10935
Help
Entry
CGC52_10935 CDS
T05889
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
capq
Capnocytophaga sp. H2931
Pathway
capq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC52_10935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capq03019
]
CGC52_10935
03009 Ribosome biogenesis [BR:
capq03009
]
CGC52_10935
Enzymes [BR:
capq01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
CGC52_10935
Messenger RNA biogenesis [BR:
capq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC52_10935
Ribosome biogenesis [BR:
capq03009
]
Prokaryotic type
rRNA helicases
CGC52_10935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ParBc
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
ATA75883
UniProt:
A0A250ESI3
LinkDB
All DBs
Position
complement(2585062..2586849)
Genome browser
AA seq
595 aa
AA seq
DB search
MNSFKQLGLNESILKAITDMGFEKPSEIQEKAIPTLLSEDVDMVALAQTGTGKTAAFGFP
LLQKIDAETKETQALILSPTRELCLQITSELKLYSKYMPNIHVVAIYGGASIEEQTKSIR
KGAQIIVATPGRMQDMIRRGFVNISNIDICVLDEADEMLNMGFYEDITSILSHTPDTKNT
WLFSATMPNEVAKIARQFMYKPFEVTVGSRNQASNNIRHEYYMVNGRHRYQALKRLADAN
PDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVIIPKSEVKKIKSIEKI
IQQPFEQKPLPSGIEICEIQLYHLANNIKNSTVETAIEDYLPAIYDVLQGLDREEIIKRM
VAVEFSRFFNYYKNAEDLNASNGKEKGNSDNGEVRYFINIGERDGYDWKTLKDFLKATLN
LDRDDVFKVDVKNSFSFFNTDAELVDLVTSTFNDFQLDGRFVNVEISKKEERGSGRNGRD
SRGKGEFKGRNRGDSKRRDRDSKSEGRSSSRRKDRGRGQKAAQAFDNAFKRKKRK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatttaaacagttaggactgaacgagtccatcctcaaagccattactgatatg
ggctttgaaaaaccttccgaaattcaagaaaaagccatccccaccctgttgtccgaagat
gttgatatggttgcgttggctcaaaccggaacagggaaaacagcggcttttggttttcct
cttttacaaaaaattgacgctgaaactaaagaaacacaagctcttatcctttctcctacc
agagaattgtgtttacaaattacttctgaattgaaattgtattccaagtacatgcctaat
attcatgtagttgccatttatggaggagcaagtatcgaagaacaaacgaaaagcattaga
aaaggggctcaaattattgtagctacgcctggtcgtatgcaggatatgattcgaagaggt
tttgtaaatatttcaaatatagatatttgcgttttagacgaagctgatgaaatgcttaac
atgggcttctatgaggacatcaccagtatcctatcacatacgcctgacacaaaaaatacg
tggcttttttcagcaactatgccgaacgaagtagctaaaattgcacgtcagtttatgtat
aaaccttttgaggttaccgtaggttctcggaatcaggcgtcgaataatatccgtcacgaa
tactatatggtcaatggacgccatcgctaccaagctttgaaacgtttggcagatgcaaat
ccggacatattttcagtggttttctgtcgtacaaaaaaagatactcaagcagttgctgaa
aaattaatcgaagatgggtataatgcagctgcattgcatggcgatttaagtcaaaatcaa
cgcgatttggttatgaaatcattcagagccagacaaatacaaatgttagtagcaactgac
gttgctgctcgagggattgatgttgatgatatcacacatgtgattcactaccaacttcct
gatgaaactgaaacctatacccaccgaagtggacgtacaggtcgtgcaggaaaatcggga
gtttctatggttatcatccctaaaagtgaggtgaaaaagataaaatccatagagaaaatt
attcaacaaccctttgaacaaaaaccactccccagtggcattgaaatttgtgaaattcag
ctctatcatctggcaaacaacatcaaaaatagtacagtagaaactgccatagaggactac
ttaccagctatttacgatgttttacaaggtttagatagagaagaaattattaaacgaatg
gtggcggtagagtttagccgtttcttcaattactacaaaaacgctgaagatttgaatgcg
tctaacggaaaagaaaaaggaaattccgataatggcgaggtacgttatttcataaacatt
ggtgaaagagatggttacgattggaaaactttaaaggacttcttaaaagcaaccttaaat
ttagaccgtgacgatgtttttaaagtagacgtaaagaacagcttctctttctttaatacg
gatgctgaattggttgatttagtgaccagtacatttaatgattttcaattagatggacgt
ttcgtaaacgttgaaatttctaaaaaagaagagcgaggtagcggtagaaatgggcgcgat
tcaagaggtaaaggagaatttaaaggcagaaaccgaggggactcaaaacgaagagatcga
gattctaaatccgaaggtcgttcttcatctcgaagaaaagacagaggcagaggacaaaaa
gcagcacaagcctttgataatgcctttaaaagaaaaaaaagaaaataa
DBGET
integrated database retrieval system