Caproiciproducens sp. NJN-50: EQM14_06065
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Entry
EQM14_06065 CDS
T05807
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
capr
Caproiciproducens sp. NJN-50
Pathway
capr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM14_06065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capr03019
]
EQM14_06065
Messenger RNA biogenesis [BR:
capr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQM14_06065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QAT51242
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Position
1262376..1264517
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AA seq
713 aa
AA seq
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MDSAERKGEENQKVGTFQEKRPELYQKITPPRNSAQKQTHPAARQGRRPGVKKNAGGQDA
AAHRDLARQPQPEHQPVQSKGTDGKQNAEPPQQTGTKTQKNPRPKNGVKPRGGRQKSAVK
EPLTAIQKTVQQYMTEQSAKEKKEAAAQKGKRSRRGRQSQQKPSIRAYFLGGLNEVGKNF
TLFECENDMIIVDCGMAFPDGDMLGVDLVIPDFTFVERNAENIRGIVLTHGHEDHIGALP
YLLKKVNVPIYGTTFTLALVNSKLKEHGLQNSVKAVVMQPGDHAQLGCMDVEFIHVNHSV
PDAVAIAIHSPAGVVIHTGDFKIDCTPAQGKMIDLGRLAQLGNEGVLALFSDSTNAEREG
YTKSERKVDSSFDMLFKRAQDSRIIIATFASNVSRVQQIINCAVKYGRKVALSGRSMVNV
MTIGVELGYLDVPQGTLIDIDMINRYPKEQIVLVTTGSQGEPMSALTRMAFADHRKVEVG
PGDFIIISARPIPGNEKTIGNVIDELMKRGCRVVYESMYEVHVSGHACQEELKLMQGIVR
PKYFIPVHGEQKMLRKNAELSYSMGRDPRNVFIGDIGDVVEINEDYMKRLPPVPAGSVMV
DGLGVGDVGSVVLRDRKHLAEDGLIVVVCTISCTDGHIISGPDVVSRGFVYVRESEPLID
EVRDLVASVLQDCAENRIHDWGTLKTRIKDELSRLLYNRTRRSPMVLPIIMEV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggattcggctgagcgtaagggcgaggagaatcaaaaagtcggaacgtttcaggaaaag
cgtcccgagctttatcagaagattactccgccccgaaattctgctcagaagcagacgcac
ccggctgcgcggcagggcaggcgccccggcgtaaaaaagaatgcgggcgggcaggatgcc
gctgcgcatcgggacttggcacgtcagcctcagccggagcaccagcctgttcagtcgaag
gggacggacgggaagcagaatgcggagcccccgcagcaaaccgggactaagacgcagaag
aatccccgtccgaaaaacggcgtaaagccgcgcggcggcagacagaaaagcgccgtaaaa
gaaccgctgaccgcaattcagaaaaccgttcagcagtacatgacggaacagtccgcaaag
gagaaaaaagaggcggccgcccaaaagggcaagcggagccgcagggggcggcagagtcag
cagaaaccgtcaattcgggcctattttctggggggcctgaacgaggtcggaaaaaacttt
acgctgtttgaatgcgagaacgacatgatcatcgtcgactgcggcatggcgttcccggac
ggcgacatgctgggtgtggaccttgtcattccggacttcacgtttgtggaacggaacgcc
gagaatatccgcggaatcgtactgacgcacggtcatgaggaccatatcggggccctgccg
tacctgctcaaaaaggtgaacgtcccgatttacggaaccacgtttacgcttgcgctggtt
aacagcaagctgaaggaacacggccttcagaattccgtgaaggccgttgtcatgcagccc
ggcgaccatgcccaactcgggtgcatggacgtcgaattcatccatgtcaaccactctgtc
cccgacgccgtcgcgatcgccatccattccccggcgggcgttgtcatccatacgggagac
tttaaaatcgactgcaccccggcgcagggtaaaatgatcgatctgggccgtctggctcag
cttggcaacgagggcgtcctcgccctgttttcggattctaccaacgcggagcgcgagggc
tacaccaaatcggagcgcaaagtcgacagttcgttcgacatgctgttcaaacgggcgcag
gacagccgcatcatcatcgcgacttttgcctccaatgtcagccgcgtgcagcagatcatc
aactgcgcagtgaaatacgggcggaaggttgccctttccggcagaagcatggtcaatgtc
atgacgatcggcgtggagcttggctatctggacgtcccgcagggaacactgatcgatatc
gatatgatcaaccgctaccccaaagagcagattgtgcttgtcacgacaggcagccaggga
gagccgatgagcgccctgacgagaatggcctttgcggaccatcggaaggtggaggtcggc
ccgggcgatttcattattatttcggcgcggccgattccgggcaatgagaagaccattgga
aacgtgatcgacgagctgatgaaacgcggctgccgcgtcgtttacgaatccatgtacgag
gtccatgtttcaggacacgcctgtcaggaagagctcaaactgatgcagggcattgtgagg
ccaaaatatttcattcccgtccacggagagcagaagatgctgcgcaaaaacgccgaactt
tcctactcgatgggcagggacccgaggaatgtgttcatcggggatatcggagacgtcgtg
gaaatcaatgaggattatatgaaacgtcttcccccggtccccgccggaagcgtcatggtg
gacggcctcggcgtcggggacgtcggcagcgtcgtcctgagggaccgcaagcatcttgcc
gaagacgggctgatcgtggtcgtgtgcaccatttcctgcacggacgggcacatcatatca
ggtccggacgtcgtgtcccgcggctttgtctatgtgagggaatccgagccgctgatcgat
gaggtgcgcgacctggtcgcttccgttctgcaggattgcgcggaaaacagaatccacgac
tggggaaccctcaaaacccgcatcaaagacgaactgtcccggctgctttacaaccgcacg
cgccgcagcccgatggttctgccgattatcatggaagtgtaa
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