Caproiciproducens sp. NJN-50: EQM14_06115
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Entry
EQM14_06115 CDS
T05807
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
capr
Caproiciproducens sp. NJN-50
Pathway
capr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM14_06115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capr03019
]
EQM14_06115 (rnr)
03016 Transfer RNA biogenesis [BR:
capr03016
]
EQM14_06115 (rnr)
Enzymes [BR:
capr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EQM14_06115 (rnr)
Messenger RNA biogenesis [BR:
capr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQM14_06115 (rnr)
Transfer RNA biogenesis [BR:
capr03016
]
Prokaryotic type
tRNA degradation factors
EQM14_06115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
RNase_II_C_S1
GMT-wHTH
TFA2_Winged_2
HTH_24
S1_RRP5
MarR_2
WHD_2nd_SelB
CSD
RPA_C
Motif
Other DBs
NCBI-ProteinID:
QAT51243
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All DBs
Position
1277304..1279385
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AA seq
693 aa
AA seq
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MSYLNKIPQGISSRDLIKRLRLSRKDYNKALDELQKEGKVSVSRSRRIRRVKEKSTVDAT
IVSLSRGFAFARPDGGGDDIFIHADHLKNAFIKDRVKLHRVRQSPKGPSAEVDSISEKSS
RVITGTLNKAKDRCEMAPDDAIRYPIRVVKNLPRGIKSGDKIQAKISRQKNSDELQAEIV
KVYGKSNSAKVCADAILDQYGIRTRFEKEAAEEAKRVSSSAISEADLTGRLDLRKLAICT
IDGAGAKDLDDAVSVSKTKKGFRLGVHIADVSHYVKEDGALDREAFARGTSVYFADRVVP
MLPEELSNGACSLNAGADKLAFSAMIELSLDGEILSYRFRKSVIRSRVRGVYSEVNQIFS
GKADRELKKKYYPVIRSLNAARELAKILKKRSGENGSFDIESTESEFTLNERGVCVDVRP
RSSGEAEEMIEQLMITANQAAAKLAKTKGIPFVYRVHEQPDPERVKTLIQLVDAVGLNSR
TLKKKGELSAADFGAVLDQAQGTPIQKVISHQLLRTMAKARYDSKPIGHFGLALEDYCHF
TSPIRRYPDLAIHRILTALLTEKDQGRINRFQGFAVGAAKSSSNAEVRAMGAERDAEDCY
MAEYIGRHIGEVFDGVVSGVTQRGIFVELANTVEGFVPIDSFQDANYQFDGMITQVDRNS
GKKLTIGQPMRIQVVSADVAGGRIDFAPAGDPD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacctcaataagataccgcagggcatttcgtcgcgcgatttaatcaaacggctc
agactgagccggaaggattacaataaggcgttggatgaactgcagaaagagggcaaagtc
tcggtcagcagaagccgcagaatccgcagggtaaaagagaaatccacggttgacgccacg
atcgtttctctttccagaggatttgcttttgcccgtccggacggcggcggagatgacatt
ttcattcatgccgaccacctgaaaaatgcctttattaaagacagggtaaagctgcaccgc
gtcaggcagagtcccaagggacccagcgcggaggtggattccatctctgagaaaagcagc
cgtgtaatcaccggaactctgaacaaagcaaaagatcgatgtgaaatggccccggacgac
gcgatccgatatccgatccgggttgtgaagaacctgccgcgcgggataaaaagcggggac
aagatccaggcgaaaatcagcagacagaaaaattcagacgagcttcaggcggaaatcgtt
aaagtctatggaaaatcgaacagcgccaaagtctgcgccgacgcgatcctcgatcaatat
ggaatccggacccgctttgaaaaggaagcggcggaagaggcgaaacgcgtttcctcgtcc
gcaatttcggaagcggacctgacaggaaggctggaccttcggaagcttgccatttgcacg
atcgacggcgcgggtgcgaaagaccttgacgacgccgtttccgtcagcaaaacgaagaag
gggttccggctgggagtccatatcgcggacgtgtcgcattatgtgaaggaagacggggcg
ctggaccgggaggcgtttgcacgggggacctccgtttactttgccgaccgcgtcgttccc
atgcttccggaggaactttccaacggcgcgtgctctttaaacgccggcgcggacaagctg
gcgttttccgcaatgatcgaattgagtctcgatggagagattctgtcctaccgtttccgg
aaaagcgtgatccgttcccgggtccgcggcgtttactcggaggtgaatcagattttttcc
ggaaaagcggaccgtgaactgaagaaaaaatactatccggtgattcgatctctgaatgcg
gcgcgggagcttgcgaaaatcctcaaaaagcgttcgggggagaacggctccttcgatatt
gagagcacggaatccgaatttacgctgaacgagcggggggtctgtgtggatgtccgtccg
cgctcgagcggagaagcggaagagatgatcgaacagctgatgatcacggcgaaccaggcc
gcggcaaagctggcgaaaacgaaggggatccccttcgtttacagagtccatgaacagccc
gacccggagcgggtcaagacgctgattcagctggtggacgcggtcgggctgaattcccgc
acgctgaagaagaagggggagctttccgccgccgatttcggtgcggtattggatcaggcg
cagggcacgccgattcagaaggtgatatcgcaccagctgctgcggaccatggcgaaggcc
cgctacgactccaagccgatcgggcatttcgggcttgcgctggaggactactgccacttt
acctctccgatccgcagataccccgaccttgcgattcaccgcatcctgacggcgctgctg
acggaaaaggaccagggcaggatcaaccgttttcagggttttgccgtcggcgccgcaaaa
tcctcctccaatgccgaggtgcgcgccatgggggcggaacgcgatgcggaggattgctat
atggccgaatacatcggccggcacatcggtgaagttttcgacggggtcgtcagcggagtg
acgcagcgcggcatttttgtggagcttgccaacacggtggagggatttgtgccgatcgac
agttttcaggacgcaaactaccagtttgacggcatgattacccaggttgaccgcaactcg
ggcaaaaagctgaccatcggacagccgatgcgcattcaggtggtttccgccgacgtggcg
ggcggccgcatcgatttcgcgcctgccggcgacccggattaa
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