Caproiciproducens sp. NJN-50: EQM14_11565
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Entry
EQM14_11565 CDS
T05807
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
capr
Caproiciproducens sp. NJN-50
Pathway
capr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM14_11565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capr03019
]
EQM14_11565
03009 Ribosome biogenesis [BR:
capr03009
]
EQM14_11565
Enzymes [BR:
capr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EQM14_11565
Messenger RNA biogenesis [BR:
capr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EQM14_11565
Ribosome biogenesis [BR:
capr03009
]
Prokaryotic type
rRNA helicases
EQM14_11565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
DbpA
DeaD_dimer
CMS1
MCR_C
Cas3-like_C_2
AAA_22
DUF724
CobA_CobO_BtuR
SCAR_helical
Motif
Other DBs
NCBI-ProteinID:
QAT50348
LinkDB
All DBs
Position
2391716..2393140
Genome browser
AA seq
474 aa
AA seq
DB search
MRKFSKYLQNVKVTIVCGGQSIQIQIRQLRTAQIIIGTPGRIMDHMRRRTLSLENLKTVV
LDEADEMLNMGFLEDIQTILKQSPETRQTVLFSATMPPAIMKITKEFQTDPQIIAVDKGQ
KAVDTISQFYYNIPRVDKTKALKLLLEYHRPKRVLIFCNTKKMVDELCGQLNDSGFQTAG
LHGDLKQNQRNQVMSDFKNGRTVILVATDVAARGIDAEDIDAVFNYDIPDEDEYYVHRIG
RTGRAGKAGASYTLAAGRSQLQRVHSLEKFMDLKMEEASVPDIEEIQKRHLKKFRGTIKQ
FMDKNSGSEWTSFIDELEQNGYEAKRIAAALCKLLYDKSRKTGALKNVRKIEPTSPEEGK
VRLKIDIGTDNKIIPDFIIGTIVETTGLPVVAVGKIDLYRERSIVEMEPNDADLVLKKMN
GYRMKQRVVHIAALKTKGLGHRDHAYPSGSKRRIDSRNRYGAGSAHKYNRSRSK
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaaattttcaaaataccttcaaaatgtcaaagtgacaatcgtctgcggcggacag
tccatacagatacagatccgccagttgcgcacggcgcagatcatcattggaactccgggc
cgtattatggatcacatgcgccgcaggaccttgtcgttggagaatctgaagacggtcgtt
ctggatgaagcggatgaaatgctgaacatgggctttttagaggatattcaaaccatcctt
aagcagtctcccgaaaccaggcaaaccgtcctgttcagcgcgaccatgccgcccgccatt
atgaagattacgaaagaatttcaaaccgacccgcagatcatagcagtagacaaaggtcaa
aaagcagtcgataccatctcgcagttctactacaacatcccccgggtcgataagacaaaa
gcattaaaactattgcttgagtatcatcgccccaagcgggtgctgattttctgcaatacg
aaaaagatggttgacgagctctgcgggcaactgaacgacagcggatttcaaacggccggc
cttcatggcgatttaaagcaaaatcaacgcaatcaggtgatgagcgactttaaaaacggc
cgtaccgttatcctcgttgcgaccgatgtggcggcgcgcggaattgatgccgaagacatc
gacgccgtgttcaactacgatattcccgatgaagatgaatattacgtccatcgcatcggc
cgcacaggccgcgcaggcaaggcgggagcatcgtatactctggcagcgggcaggtcccag
cttcaaagggtgcattcactggaaaaattcatggacttaaaaatggaagaagcctctgtg
cccgatattgaggagattcagaaacggcatcttaaaaaattcagaggaaccatcaaacag
tttatggataaaaacagcggctccgagtggacatcgtttatcgacgagctggaacagaac
ggatatgaagcaaaacggatcgcagcggctctctgcaaactgctctatgataaaagcaga
aaaaccggcgccttaaaaaatgtccgaaaaattgagccgacttcccctgaagagggaaaa
gtcaggttaaaaatcgacatcggcaccgacaacaaaataatacctgattttatcatcggc
accatcgtcgagacaaccggattgccagtggtcgcagtcggaaaaatcgatctttacagg
gagcgttccattgttgaaatggaaccgaatgacgcggatttagtcttgaaaaaaatgaac
ggataccgaatgaaacagcgcgtcgtacacattgctgcattgaaaacgaaaggattgggc
cacagagatcatgcgtatccgtctggttctaaacggcgcattgacagcagaaatcgttat
ggggccggttcggcgcataaatataaccgcagcagaagcaaatga
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