Caproiciproducens sp. NJN-50: EQM14_15185
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Entry
EQM14_15185 CDS
T05807
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
capr
Caproiciproducens sp. NJN-50
Pathway
capr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
capr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EQM14_15185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capr03400
]
EQM14_15185 (mfd)
Enzymes [BR:
capr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EQM14_15185 (mfd)
DNA repair and recombination proteins [BR:
capr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EQM14_15185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QAT51002
UniProt:
A0A410Q6T5
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All DBs
Position
3102342..3105809
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AA seq
1155 aa
AA seq
DB search
MEFLTNAIRGLKEFSDLEAAVDSRALPAAVTGVSGVHKANIIYSLCADLRRRAFVVAGDE
PEAQRLCSDLAAMGLKPLFYPARDFSFHDAEGSSHEYEHQRLQVLERILSGGCDAVVCCI
DAALQLTIPPAELKRRTAVLEAGKSVPMERVLEALSACGYERAVQIEGAGQFASRGGILD
FYPPGGEAPVRAEFFGEEIDSLSLFDPISQRRTENIQSAVIEPAAEALIEHPRVLAERIR
KLAGELRGKTAPAAKAVLNEQAGKLENGLRLGCADKFLPLLYGEKATLFSYLTDDALLFV
SEPVKSRERMRGALWQWGEDLKDLFSDGTLCRGLDSYSGDWASALAAFERFGAVYLDAFV
HGGYETPVRSLIGMSARQLSTWGGSIQLLAEDLQNMLANRWACAVLCGSDRAARTVAADL
QVKGINAAFVESPVRIERGEVVVTIGALSGGLEYPGAFFGLITHGRAALPHVKKAKKKKS
GEAVYSISDLTPGDYIVHATHGIGVFEGIHKIDMNGVVKDYIKVRYAKSDLLYVPVTQLD
MVSKYIGPREDANVRLSRLGGSDWQKAKARVRRAVKDIADDLIRLYAQRMQAQGHAFAPD
SEWQHDFEAHFEFDETEDQLRCIEEIKADMEKSAPMDRLLCGDVGFGKTEVALRAAFKCI
TDSMQCAMLVPTTILAWQHYQTITRRMEGFPIRVELLSRFRTPKEQEEIIRKLERGEIDM
VVGTHRLISKDVEFRNLGLIIVDEEQRFGVAQKERLKSRYKDVDVLTLSATPIPRTLNMA
LSGIRDMSVIEEAPHDRHPVQTYVLEHDDGIIYEAIRRELRRGGQVYYLHNDVGSIQRAA
AKIQEAIPEAKVGFGHGKMNEQELSEVWRRLIEQEIDVLVCTTIIETGVDVPNVNTLIIE
NADHMGLSQLHQIRGRVGRSSRRAFAYLTFKRDKALSEIAQKRLSAIRQFTEFGSGFKIA
MRDLEIRGAGNILGGEQHGHMEAVGYDMYLHLLAEAVGRAKGETVQEYGEECLVDMQVTA
HIPESYISDLNQRLDIYRRIADIRTREDALDVTDELIDRFGEPPASVNGLVDIALLRNVA
SRLGIREVRQQENTLFLYSDRIDMKRIGALVSALRGRVLLNAGAKPYVSVRIAQNETPLQ
TLSQALKLMEAPPEG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggaatttctgacaaacgcgatccgcggactcaaggaattttcagacctggaagccgcg
gttgacagccgggcgctgccggccgcggtgaccggtgtctccggggtccacaaggcaaat
atcatctattcgctctgcgccgacctgcggcgcagggcttttgtcgtcgcgggcgacgaa
ccggaggcgcagcggctttgctccgacctcgcggcaatgggcctgaagcctctgttctac
ccggcgcgcgacttttcctttcatgacgcggagggcagttcgcacgaatacgagcatcag
aggctgcaggtactggaacgcatcctctccggcggctgcgacgcggtcgtctgctgcatc
gacgccgcgctgcagctcaccatcccgcccgcagagctgaaacgccgcaccgccgtgctc
gaggcgggaaaaagcgtaccgatggaacgggtgctggaagctctttccgcgtgcggctat
gagcgggccgtgcagatcgagggcgcggggcagttcgcgtcgcgcggcggaatcctggat
ttctatcccccgggcggcgaagcgccggtccgcgcggaatttttcggggaagagatcgat
tcgctgtcgctgttcgacccaatctcccagcggcggaccgagaacatccaaagcgccgtg
atcgaaccggcggcggaagcgctgatcgaacatccccgggtcctggcggaacggatccgg
aagctcgccggcgagctgcgggggaaaaccgccccggcggccaaagccgtcctgaacgaa
caggccggcaagctggaaaacggtctgcgcctgggctgcgcggataaatttcttcccctt
ctgtacggggaaaaggcgacgcttttcagttatctgacggatgacgccctgctgtttgtc
agcgaaccggtcaaatcgcgcgagcggatgcgcggcgcgctgtggcagtggggcgaggac
ctgaaggacctgttctccgacgggacgctctgccgcggcctggacagctacagcggggac
tgggcctcggctcttgcggcgtttgaacgcttcggcgcggtctatctggacgccttcgtt
cacggcggctacgaaacgccggtgcgctccctcatcggcatgagcgcgcgccagctttcc
acctggggcggcagcatccagctcctggccgaggacctgcagaacatgctcgcgaaccgc
tgggcctgcgccgtgctgtgcggctccgaccgcgcggcgcgcaccgtcgccgcggatttg
caggtcaaggggatcaacgcggcgtttgtggaaagcccggtcaggatcgaacgcggcgag
gtggtcgtgaccatcggcgcgctgtccggcggtctggaataccccggcgccttcttcggc
ctgatcacgcacgggcgcgcggcgcttccccatgtgaaaaaagccaaaaagaaaaagagc
ggcgaggcggtttacagcatttccgacctgacgcccggggactacatcgtccacgccaca
cacggcatcggcgtctttgaagggatccataaaatcgacatgaacggcgtcgtcaaggac
tacatcaaggtgcggtacgcaaaaagcgaccttctgtacgtcccggtgacgcagctcgac
atggtgtccaaatacatcggcccgcgggaggacgccaacgtccgcctgagccgcctgggc
ggcagcgactggcagaaggcgaaggcccgggtgcggcgcgcggtcaaggatatcgcggac
gacctgatccggctttacgcccagcggatgcaggcccaggggcacgcgttcgccccggac
tcggaatggcagcacgacttcgaggcccatttcgagttcgacgagacggaggaccagctg
cgctgcatcgaggagatcaaggcggacatggaaaaaagcgcgccgatggaccggctcctg
tgcggagacgtcgggttcggcaagacggaggtggcgctgcgcgccgcgttcaaatgcatc
acggattccatgcagtgcgcgatgctggtgccgaccacgatcctcgcctggcagcactac
cagaccatcacccggcgcatggagggcttccccatccgcgtcgagctgctttcgcgtttc
cggacgccgaaggagcaggaagaaatcatcaggaaacttgagcgcggcgaaatcgacatg
gtggtcggaacgcaccgcctgatctccaaggacgtcgaattccgcaatctaggcctcatc
attgtcgatgaggagcagcgcttcggcgtcgcgcagaaggagcgtctgaaatcgcggtac
aaggacgtggacgtcctcacgctctccgcgacgccgattccccgcacgctcaacatggcg
ctgtccggcatccgggacatgagcgtgatcgaagaggcgccgcacgaccggcaccccgtt
cagacctatgtgctggaacacgacgacggcatcatttacgaagccatccgccgcgagctg
cggcgcggcgggcaggtttactacctgcacaacgacgtggggagcatccagcgcgccgcc
gcgaagattcaggaggcgatcccggaagcgaaggtcggattcggccacggaaaaatgaat
gagcaggagctttcggaggtctggcggcgcctgatcgagcaggaaatcgacgtcctggtc
tgcaccacgatcatcgagaccggcgtggacgtgccgaacgtcaacacgctgattattgaa
aacgccgaccacatgggcctttcgcagctgcaccagatccgcggccgcgtcgggaggtcc
agccgccgggcgttcgcctacctgaccttcaagcgggacaaggcgctttccgaaatcgcg
cagaagcgcctgtccgccatccgccagttcacggagttcggctccgggttcaagatcgcg
atgcgcgacctggagatccgcggggcgggcaacatcctcggcggagaacagcacgggcac
atggaggccgtcggctacgacatgtacctgcacctgctggccgaggccgtcggccgcgcc
aagggcgaaacggtgcaggagtacggcgaggaatgcctggtcgacatgcaggtcaccgcc
cacatcccggaaagctatatttccgacctgaaccagcggctcgacatctaccggcgcatc
gcggacatccgcacgcgcgaggacgcgctcgacgtcaccgacgagctgatcgaccgcttc
ggcgaaccgccggccagcgtaaacggcctggtcgacatcgcgctgctgcgcaacgtcgcc
tcccgcctcggcatccgcgaagtccggcagcaggaaaacacgctgttcctctattccgac
cgcatcgacatgaaaaggatcggcgctctggtgtccgccctgcggggccgcgtgctgctc
aacgccggggccaagccctatgtcagcgtgaggatcgcccaaaacgagactcccctgcag
acgctttcccaggccctgaagctgatggaggccccgccggaaggatga
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