Candidatus Paracaedimonas acanthamoebae: IM40_00020
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Entry
IM40_00020 CDS
T03240
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caq03032
]
IM40_00020
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_00020
Enzymes [BR:
caq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
IM40_00020
DNA replication proteins [BR:
caq03032
]
Prokaryotic type
DNA Topoisomerases
IM40_00020
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IM40_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_insert
HATPase_c_3
Bromo_MP
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
AIL12266
LinkDB
All DBs
Position
3755..6190
Genome browser
AA seq
811 aa
AA seq
DB search
MTNPQNPEVKSPEEYGAHSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE
ALAGHCDRIEISLNADGSVTVSDNGRGIPVGIHPEEGVSAAQVIMTQLHAGGKFDQNSYK
VSGGLHGVGVSVVNALSETLELKIWQSGKEHSMRFHHGEPEEPLKITGDIVNKTGTQITF
KPSSETFTQTTFDFSTLEHRFRELAFLNSGARLILTDLREADPKVSELYYEGGTKAFVQY
LDRSKNAIHEPSIAIFGEKDGITVDIAMEWTDSYHETLLCFTNNIPQRDGGTHLIGFKAA
LTRIVNNYANESGVAKKEKVTLSGEDAREGLTSVISVKVPDPKFSSQTKDKLVSSEVRPV
VEGLVVERLQQWFEEHPHEARKIVQKVVEAATAREAARKARELTRRKGALDIESLPGKLA
DCQERDPAKSEVFLVEGNSAGGTAKGGRDRRFQAILPLRGKILNVERARFDKMLGSQEIG
TLITALGTGIGPEEFNADKVRYHKIIIMADADVDGSHIRTLLLTFFYRQMPQLIEKGYLY
IAQPPLYGVKRGNSVLYLKNERALDDYLMNVGSEGVQVTINGGSQIGAGDLQNLITLSRK
AKMLIESLANKVGNSMLVEHAAIEGLFDPTVFNSPERPQLAQKLAGRMNRLKDINEVGEW
EGGTTEEGLHVTRTVRGVTEVLKLNSSMMQGGDAYQLSQLHQGLKEYFEKPVTIAFKDKQ
TVIEGPVHFIETILEQGQKGISIQRYKGLGEMNNDQLWETTLNPEARSLLQVKITHADAA
EEVFSTLMGDLVEPRREFIQANALKVVNLDA
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaccctcaaaatcctgaagtaaaatctccagaagaatacggcgcacactctatt
aaagttctgcgcgggcttgatgcggttcgtaagaggcctgggatgtatattggagataca
gatgatgggtcaggtctccatcatatggtctatgaagttgttgataatgcaatcgatgag
gcattagcagggcactgtgatcgcatagaaattagtttgaatgcggatggttcagtgaca
gtcagtgataatggacgcggtattcctgtgggaattcatccagaagaaggcgtctctgct
gctcaagtgattatgacacagcttcatgctggtggtaaatttgatcaaaattcttataag
gtttccgggggacttcatggtgtgggtgtttctgttgtaaacgcattatcagaaacctta
gagctcaagatttggcaaagtggaaaagaacattccatgcgttttcatcatggagaacct
gaagagcctctaaagatcacaggagacatcgtcaacaaaacaggaacacaaattaccttt
aaaccttcaagcgaaacatttacgcagacaacatttgatttttccacccttgaacatcgt
ttccgcgagcttgcattccttaactcgggcgctcgtcttattttgaccgatttaagggaa
gcagatcctaaggtaagtgaactttattatgagggagggacgaaagcattcgttcagtat
cttgaccgtagcaaaaatgctattcatgagccttcaatcgctatttttggagaaaaagac
ggcattacggtcgatattgcgatggaatggacggatagttatcatgaaacgctcttatgc
tttaccaataacattcctcaacgagatggaggaacgcaccttataggatttaaagcagca
ttaacacgtattgtgaataattatgctaatgagagcggcgttgcaaaaaaagaaaaagta
actctttctggcgaggatgcgcgagaaggcctcacaagcgtgatctcagttaaggtccca
gatccaaaattttcttctcaaacaaaagacaagcttgtttcatcagaagtgcgacccgtg
gtcgaggggctcgtagttgagcgccttcagcaatggtttgaagaacatcctcatgaagcg
cgtaaaattgttcaaaaagtcgttgaggcggcaacagcccgcgaagcggctcgtaaagcc
cgcgagttaacccgtcgtaaaggagctttagatatcgaatccttgccaggtaaattagct
gattgccaagagcgggatcctgcaaaaagcgaagtttttctcgttgaggggaatagcgcg
gggggcacggcaaaaggggggcgtgaccgacggtttcaagcgattcttcctttaagaggt
aaaattttgaatgtggaaagagcacgctttgataaaatgctaggatcacaagagatcggc
actttaatcacggctctcgggacaggcattggcccagaagaatttaatgccgataaagta
cgttatcataaaattatcattatggcggatgcggacgtggatggaagccatatccggact
ttgttgctgaccttcttttatcgtcaaatgcctcaacttattgaaaaaggatatctttat
attgctcaaccccctctttatggtgtcaaaagaggaaattcagtgctttatctcaaaaat
gaacgagctttagatgattatttaatgaatgtgggaagtgaaggcgtgcaagtcacaatt
aacggtggaagccaaattggggctggtgatttgcaaaacttaattaccctctcccgcaaa
gcaaaaatgctcatagaatctcttgctaataaggtggggaattcgatgcttgttgaacat
gcggctattgaaggattatttgatccgacagttttcaactctcctgagcgtcctcaattg
gcccaaaaattggcaggacggatgaatcgattaaaagatatcaatgaggttggcgagtgg
gaaggcggaacaacggaagaagggcttcatgtcacacgaacagttcgtggagttacagaa
gtattaaagctcaattcctcaatgatgcaaggaggggatgcctatcaactctctcaactt
catcaagggcttaaagagtattttgaaaaaccagttaccatagcgtttaaagataagcaa
acggtgatcgaaggtcctgtgcattttatcgagacaattttagagcaagggcagaagggg
atttctatccaacgttataaaggacttggtgagatgaacaacgatcaactatgggaaacg
actttaaaccccgaagcacgcagccttttacaagtaaaaattacccatgcagatgcagct
gaagaagtgttttctacattaatgggggatcttgttgaaccgcgtcgtgagtttattcaa
gcaaacgccttgaaagtcgttaatttggatgcttaa
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