Candidatus Paracaedimonas acanthamoebae: IM40_00060
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Entry
IM40_00060 CDS
T03240
Name
(GenBank) hypothetical protein
KO
K03655
ATP-dependent DNA helicase RecG [EC:
5.6.2.4
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IM40_00060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_00060
Enzymes [BR:
caq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM40_00060
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IM40_00060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecG_wedge
ResIII
RecG_dom3_C
tRNA_anti-codon
AAA_30
Cas3-like_C_2
SecA_DEAD
tRNA_anti_2
DEXQc_Suv3
SLFN-g3_helicase
nSTAND3
AAA_19
TsaE
Motif
Other DBs
NCBI-ProteinID:
AIL12272
LinkDB
All DBs
Position
11903..14014
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AA seq
703 aa
AA seq
DB search
MPSSFVYPEFDSLRSLFSSVATINGVGPTTAHLLQKLGCTIIRDLLWHLPQEVQIRRFSP
AIKFACPNELITLQVRVINHSVLRKQKGRLTSYRVICSDSEDSIELVFFNPNLSYLKNAL
VVGSEVIISGRFEIYKGRFQMTHPDHIGPLTSRAFWEGAEPIYPLTQGLPQKMLQKIIKA
SLIKCPQLPEWLSSHILKKYHWPSWQTALQKLHSPSHENDLHLGHTCRRRLAYDEILSNQ
LSLILTRCQAEVAQGHALTGDGHLQQKVLETLPFNLTQDQVKALAEIQQDMASSSRMVRL
LQGDVGSGKTIVAFLCMVKAVEAGYQVALLAPTEILARQHYKTMEDWARTAGVSLELLIG
KDTTKRRQKIYQSLAEGDVNIVIGTHALIQPEVQFKNLGFIVIDEQHRFGVEQRLNLSEK
GINIDILSMTATPIPRTLMLTVFGDLSSSYLRQKPSNRKDIITTTIPLARLNEIVMSLKR
ALHKGDKVYWVCPLIEESESLDLAAAEERFAMLQTLFPEKVGLIHGRLRSHEKEVTMQAF
IEGSIKILVATTVIEVGVHVEDASVIIIEHAERFGLAQLHQLRGRIGRGSQESYCLLLYG
ESLNPTARARLNVMRSTTDGFKIAEEDLKLRGGGEAFGVKQSGMPSFKFFDPIAHQDLLL
QAHDNARAILSKDPHLLGPQGQALRILLRLFEKEQTFKYLKAA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccgagttcttttgtttatccagaatttgattctttaaggtcgttattttcttctgta
gcgacgataaatggcgttggtcccacaacagctcatcttcttcaaaaacttggttgtaca
ataatacgggaccttttatggcatttgcctcaggaagtccaaatcagaagattttcacca
gcaataaagtttgcttgccctaatgaattaataacgttgcaggtaagagttatcaaccat
tctgttctgcgcaaacaaaaaggtcgcttgacctcttatcgtgtcatttgttcggattct
gaagattcaattgagctcgtgttttttaacccaaaccttagttatcttaaaaatgctctt
gttgtcggtagtgaagtgatcataagtggacgctttgagatttataaaggtcgtttccaa
atgacccaccctgaccatataggtcctttaacctctagagctttttgggagggggcggag
cctatatatccccttacacaagggcttcctcaaaaaatgctacagaaaataataaaagct
tcccttataaaatgcccacagttgccagaatggttatctagccatattcttaaaaaatac
cattggccttcttggcagacagcactacaaaagctgcactctccttctcacgagaacgac
cttcatcttggacatacttgtcgccgtcgtttggcttatgacgaaattttatcaaaccaa
ttgtctcttattttaacgcggtgccaagctgaagttgctcaagggcatgctctaacaggg
gatggccaccttcaacaaaaagtccttgaaacacttccttttaatttaacgcaagatcaa
gttaaagcacttgcggaaatacaacaggacatggcctcttcttctcgtatggtacgctta
cttcaaggcgatgtggggagtggaaaaacaatcgttgcttttttatgtatggttaaggcc
gtagaagctggatatcaagtagcgttactagctcctacagaaattttggcgcgtcagcat
tataaaacgatggaagattgggctcgaacggcgggtgttagtcttgagctattaataggt
aaagatactacaaaacgccggcaaaaaatatatcagtctttagcagaaggcgacgttaat
attgtgataggaactcacgcacttattcagcccgaagtccaatttaaaaatttgggattt
attgtcattgatgagcagcatagattcggtgtcgaacagcggcttaatttatcagaaaaa
ggaataaatattgatatattatctatgaccgcaacacctattcctcgtacgcttatgctt
acagtatttggagatctctcaagctcttatttgcgacagaaaccttccaatcgcaaagat
attattacgacaaccattcctttagctcgtttaaatgagattgtgatgagcctcaagcgc
gcattacataagggggataaggtatattgggtttgccctttaattgaagaatccgaaagc
ctggatttagctgccgctgaagaaagatttgcaatgttacagacgctttttccagagaag
gttggcttgattcatgggcggcttagaagtcatgaaaaagaagtaacgatgcaggctttc
attgaaggatcaattaaaattcttgtggcaacgactgttattgaagtaggtgttcatgtt
gaagatgcatctgtcataattattgagcatgctgaacgttttggattggcacaacttcat
caattacgaggacgtataggaagaggatctcaagaatcttattgtttgctcctttatggt
gaatcactcaatccgacagcaagggcacgcttaaacgtgatgcgttctacaacggatggt
tttaagatagcagaagaagatttaaaacttagaggtggtggggaagcttttggtgttaag
caaagtgggatgccatcttttaagttttttgatcctattgctcatcaagatttactttta
caagcccatgacaatgcgcgggctatcttatccaaagatcctcatttgttgggccctcaa
gggcaagccttacgtattcttttgcgtttatttgaaaaagagcaaacttttaagtatctt
aaggccgcttaa
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