Candidatus Paracaedimonas acanthamoebae: IM40_00240
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Entry
IM40_00240 CDS
T03240
Name
(GenBank) DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03030
DNA replication
caq03410
Base excision repair
caq03420
Nucleotide excision repair
caq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM40_00240
03410 Base excision repair
IM40_00240
03420 Nucleotide excision repair
IM40_00240
03440 Homologous recombination
IM40_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caq03032
]
IM40_00240
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_00240
Enzymes [BR:
caq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IM40_00240
DNA replication proteins [BR:
caq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IM40_00240
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IM40_00240
NER (nucleotide excision repair)
GGR (global genome repair) factors
IM40_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AIL12301
LinkDB
All DBs
Position
complement(62071..64827)
Genome browser
AA seq
918 aa
AA seq
DB search
MAPAPLKHVYLIDGSGFIFRAFHALPILTRPDGTPVNAVLGFTNMLMKLLTETDVDHLAV
IFDSARRNFRHDIYPDYKANRPPPPPELIPQFPLIREACEAFNVPSIELIGYEADDLIAS
YTQAVIQQGADVTIVSSDKDLMQLIGPSVRMFDPMKNKFIGETEVEIKFGVKPEQVIDVQ
ALAGDSSDNIPGVPGIGLKTAMQLIQEFGSLHELLSRLHEIPQAKRRETLQQNTKEALLS
YQLVTLSKEAPLPILLENLELRTPEHTKLRHFLETQNFHSILSRLERQGTIQMKAAIPDS
TPKSTSIRANYQLITKIEDLQKWIYDAKFQGFVAIDTETTSLKALQAQLVGISLALAPGK
ACYIPLHHKIKTPEDLFTSPQTQPQQIPFDTALNALKELLEDPSVLKIGHNIKYDALILS
QEKITLAPYDDTMVLSYILDGTHHGHGLDELSQLHFDYQTIKYKDVVGSGKEEVTFDFVP
LDKACAYAAEDADMTFQLYQLLKPRLPKEQAASIYETIDRPLIPILSEMEKVGITVNLQK
LKDLSQNFQVRLYALEQEIYQEVGHPFNLASPKQLGEVLFEELKLGTGKKGKSGSYGTGA
DVLEELADQGHILPQKILDWRQLAKLKSTYTDALVEEINPRTGRVHTTFGMTMTSTGRLS
SSNPNLQNIPIRTEEGRKIREAFVAKPGHLLISLDYSQIELRLLAQMANIESLKTAFRKG
YDIHALTASEVFGLPLENVDPEHRRRAKAINFGIIYGISAFGLGRQLKISPKEAAHYIEI
YNARYPGILAFMADQKEKARTQGYVETLFGRKCFIMGIHDKNPALKSFAERQAINAPLQG
TAADIIKQAMIQLPVKLAKAQLKSEMLLQVHDELILEVPEAEVEATLQIGKKTMEQVVYL
DIPLTVDTGVGRNWAETS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcaccagctcctttaaagcatgtgtatctaattgatggttcaggctttatctttaga
gcctttcatgcattacctatattgacgcgccctgatggaacacctgtcaatgcagtcctt
ggctttacaaatatgcttatgaagctcttaactgaaacggatgtagatcatttagcggtt
atctttgattcagcgcggcgaaatttccgccacgatatctatccggactataaagcaaac
cgtcctccacccccgcctgagcttatcccgcaatttcctcttatccgagaggcttgcgaa
gctttcaatgtgccttcaattgaactaattggttatgaagcggatgaccttattgcaagc
tatactcaagccgtcattcaacaaggcgctgatgtaacaattgtctcttcagataaagat
cttatgcaacttattggaccaagtgtccgcatgtttgatcccatgaaaaataaatttatt
ggagagaccgaagtcgagattaaatttggtgttaagcctgagcaggtgattgatgtacaa
gctttagcgggagatagttcagataacatccccggcgtgcccggcataggccttaaaaca
gcgatgcaacttattcaagagtttgggtctcttcatgaattactgagccgccttcatgaa
attcctcaagcaaaacgccgtgaaactcttcaacaaaatacgaaagaagctcttctgtcg
tatcagcttgtaactctttcaaaagaagctcctcttcccatactcctcgaaaatttagaa
ttgagaacgccagaacatacaaaattacggcattttcttgaaacacagaattttcactcg
attttatcgcgtcttgagcgccaaggaactattcaaatgaaagcagctatccctgattct
accccaaaatccacttctatcagggccaactatcaattaataacaaaaatagaagatcta
caaaaatggatctacgatgctaaatttcaaggttttgtggctatcgatacggaaacaacc
tctctgaaggctctccaggcacagcttgtggggatctctttggctcttgcgccaggaaaa
gcttgctatattcccttacaccataaaataaaaacgccagaagacttatttacaagcccc
caaacgcaaccccaacaaattccttttgacacagctcttaacgccttgaaagagttatta
gaagacccatctgtccttaaaattggacataatattaaatatgatgcccttatcctctcg
caagaaaagattacccttgctccctatgacgataccatggttctttcttacatcttagat
ggaacgcatcatggacatggacttgatgaactctcgcaacttcattttgattatcagact
ataaaatacaaagatgttgtgggatcaggcaaagaagaagttacatttgatttcgtgccg
ctagataaggcttgtgcttatgcagctgaagatgcggacatgacttttcaactttatcaa
ttattaaaacctcggcttcctaaagaacaagctgcaagcatttatgagacaattgatcgt
cctttaattcctattttatctgaaatggagaaagttgggattacagtcaatcttcaaaaa
ttaaaagatctaagtcagaactttcaagtacgcctttatgctttggaacaagaaatttac
caagaagtaggtcatccttttaatcttgcttctcctaaacaattgggagaagtccttttt
gaagagctaaagctaggcaccgggaagaaaggcaagagtggttcctatggaacaggagca
gatgtccttgaggagctagcagatcaaggccatattttgcctcaaaagatccttgattgg
cgtcaattggcaaaacttaaaagtacctacacggatgctttggttgaagagattaatcct
cggacaggacgcgttcacacaacatttggaatgacgatgacctcaacagggcgcctttct
tcaagcaaccctaatcttcaaaacattcccattcgaactgaagaaggccgtaagattcgc
gaagcttttgtggcaaaaccaggacatttgcttatttctcttgattattctcaaattgaa
ttaagacttctcgcacaaatggcaaatattgaatctttgaaaactgcttttcgaaaaggt
tatgatattcatgctctaacggcgtcagaagtttttggccttcctcttgaaaatgttgat
cctgaacatcgacgtcgcgcaaaagcgatcaattttggaatcatttatggaatcagcgcc
tttggtttaggtcgacaattaaaaatctcgcccaaagaagctgcccattacattgaaatt
tataatgctcgctaccctggaatcttggcatttatggcagaccaaaaagaaaaggctcgg
actcaaggatatgttgagaccttatttggacgtaaatgttttatcatgggaattcatgat
aaaaatccagccttaaaaagctttgctgagcggcaagcaattaatgcaccacttcaaggc
acagctgcggatattattaagcaagccatgattcagcttcctgtaaaacttgcaaaagct
caattaaagagcgagatgcttcttcaagttcatgatgagcttattcttgaggtgccagag
gctgaagttgaagcgacgctccaaatcgggaaaaaaacgatggagcaagtggtttatctt
gatattcctttaaccgttgataccggcgtaggacgaaattgggcggaaacaagttaa
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