Candidatus Paracaedimonas acanthamoebae: IM40_02140
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Entry
IM40_02140 CDS
T03240
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM40_02140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caq03021
]
IM40_02140
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_02140
Enzymes [BR:
caq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM40_02140
Transcription machinery [BR:
caq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM40_02140
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM40_02140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF2240
Motif
Other DBs
NCBI-ProteinID:
AIL12594
LinkDB
All DBs
Position
392341..393357
Genome browser
AA seq
338 aa
AA seq
DB search
MIQKNWQELIRPFKLNIDLLGSEHRRAQVIAEPLERGFGLTLGTALRRILLSSLQGAAVT
GIQIEGVQHEFSSIPGVHEDVTEIILNLKSLSLRKHSEGTKKLRLKAEGPGVVTAAQFEA
TSDIEILDPELVICVLDAGAKISMEVTVENGKGYVPAGQLRREDAPISFIPVDALFSPIR
RVSYKVDNTRVGQRTDYDKLIMDVETNGAVRPEDAVALAARILQDQLQQFINFEEPVVAE
EKDQEAELPFSRALLKKVEELELSVRSANCLKNENIVYIGDLVQKTENDLLRTPNFGRKS
LNEIKEVLGQMGLELGMNVTGWPPENIEEMAKKIEDPY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgatacaaaaaaattggcaagaactcattaggccttttaaactcaacattgatcttctt
ggcagtgagcatcggcgcgcgcaagttattgctgagcctttagaacgaggctttgggtta
acccttggtacggctttaagacgtattcttctatcatctcttcaaggcgctgctgtgact
gggatccaaatagaaggtgttcaacatgagtttagttcaattcctggtgttcatgaggat
gtgacagagattatcttaaatctcaaatctctctcccttcgcaaacactcagaaggaaca
aaaaaactccgcctaaaggctgaagggcctggtgttgttacagctgctcaatttgaagca
acttcagatattgaaatccttgatcctgaattagtcatttgtgttttagatgcaggggca
aagatttccatggaagtaactgttgagaatggtaagggatatgttcctgcaggtcagctg
aggcgtgaagatgctccaatcagctttattcctgttgatgctctcttctctcctattcgc
cgcgtttcctacaaggttgataatacgcgggtaggacaacgtacagactatgataagctt
attatggatgttgagacaaatggcgctgttcgccctgaagatgccgtagctttagcggct
cgtattttacaagatcaacttcagcaatttattaattttgaagagcctgttgtggcagag
gaaaaagatcaagaagctgaacttccctttagccgtgcgcttcttaagaaagttgaagag
cttgagctttctgtccgctctgcaaattgcttaaagaatgagaatattgtttatattggg
gatcttgttcaaaaaacggaaaatgatcttttacgaacaccaaattttgggcgtaaatca
ctcaatgaaattaaagaagttttaggccaaatgggtcttgaacttggtatgaatgttact
ggttggccacctgaaaatattgaagaaatggccaaaaaaattgaagatccttattaa
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