Candidatus Paracaedimonas acanthamoebae: IM40_03435
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Entry
IM40_03435 CDS
T03240
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM40_03435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caq03019
]
IM40_03435
03016 Transfer RNA biogenesis [BR:
caq03016
]
IM40_03435
Enzymes [BR:
caq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IM40_03435
Messenger RNA biogenesis [BR:
caq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM40_03435
Transfer RNA biogenesis [BR:
caq03016
]
Prokaryotic type
tRNA degradation factors
IM40_03435
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH-I_KHDC4-BBP
OB_PDCD11
PCB_OB
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AIL12790
LinkDB
All DBs
Position
complement(655206..657311)
Genome browser
AA seq
701 aa
AA seq
DB search
MFTIHRQELDWGGRQLVLETGKIARQADGAVVATYGETSVLCTVVGAKDVSKEQHFFPLT
VHYQEKAFAAGKIPGGFFKREGKPSEKEVLTSRLIDRPIRPLFPEGFYNEVQIICTLLSH
DLENDPDIVAIIGASAALAISGLPVHQILAAAKVGYKDGSFILNPTYADLEGSALELVVA
GTEEGVLMVESEAHELSEKTMLDAVMFGHSEFQKVVNTIQKLKKDAGKPEWKTVDHSVME
KAVFTQIKNFAKNDLRKAYQETKKQIRYAGIESVRHATFEALSADAHPEDVLNAQFKKLE
EEIVRGDILEQGRRIDGRDLKTVRSIEVEVGLLPRAHGSALFTRGETQALVVTTLGTAQD
EQIIDALEGESRQRFMLHYNFPPYSVGEAGRVSSPGRREIGHGKLAWRSINPLLPSKDQF
PYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLNQPVAGIAMGLIKEKDKFAVLTDI
LGDEDHLGDMDFKVAGTSRGITALQMDLKITSITEDIMKVALEQAHEGRLHILKEMEKAI
NQSRTSVKDNAPRIVSIQINKERIRDLIGPGGKVIREICETTGTKIDIAEDGKVDISSSN
QANIEAAIERIKAVAGDPEVGAIYKASVVKIMDFGAFVEYYGERQGLVHVSQLAATRVEK
VDDVVKVGDTVYVKLLGFDDRGKAKLSMKVVEQESGQEIEG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaattcaccgccaagaactggattggggagggcgtcagcttgttctcgagaca
ggaaaaattgctcgtcaagcagatggagctgtcgttgcaacttatggcgagacaagtgtt
ctttgtactgtcgtcggtgctaaggatgtctcaaaggaacaacatttttttcctttgacc
gttcattaccaagaaaaagcttttgcagcaggtaaaattcctggcggtttttttaaacgt
gaaggcaaaccaagcgagaaagaagttttaacctcaagactgattgatcgccctattcgc
cctctctttcctgaaggcttttataatgaagtacaaattatttgtacgctcttaagccat
gatcttgagaatgatcccgatatagtggctattatcggtgcgtctgcagctttagccatc
tcaggcttgcctgtgcaccaaattttagctgctgctaaggttggttataaagatgggtca
ttcatcttaaaccccacctatgcagacctcgaaggatccgctcttgagcttgtcgtagct
ggaactgaagaaggtgtccttatggttgaatctgaagctcatgagctttctgaaaaaacc
atgcttgatgctgttatgtttggtcatagtgaatttcaaaaggttgttaacactatccaa
aagcttaagaaagatgctggaaagcctgaatggaagaccgttgatcatagtgtgatggaa
aaagcagtttttacccaaattaaaaattttgctaaaaatgatctacggaaggcgtatcaa
gagacaaagaagcaaatccgttacgccggaattgaaagcgttcgtcacgctacatttgaa
gctctgagtgcggatgcacatcctgaagatgttttaaatgcgcagtttaagaaacttgaa
gaagagattgtccgcggcgatatcttagaacaaggccgtcgtattgatggaagagatcta
aaaactgtccgctctattgaagttgaggttggtcttctcccaagagctcatggaagtgct
cttttcacccgaggtgaaacacaagcgcttgtcgtaacgacgcttggcactgcacaagat
gaacaaatcattgatgcccttgaaggtgaaagtcgtcaaagattcatgttgcattataat
tttcctccttattcagttggcgaagcaggacgcgtttcttctccaggacgccgtgaaatt
ggacatgggaagcttgcatggcgttctataaacccgcttcttccgtcaaaagatcaattt
ccttatactcttcgcgttgtctctgaaattacagagtccaatggttcttcttcaatggca
acagtttgtggaagctctcttgctttaatggatgcaggtgttcctcttaatcaacctgtt
gcaggtattgcgatggggcttataaaagaaaaagataagtttgctgttttgacagacatt
ttaggtgatgaagatcacttaggagatatggactttaaagttgcaggaacatctcgtggc
atcactgcacttcaaatggacctaaaaatcaccagcattactgaagacattatgaaagtt
gcgcttgagcaagctcatgaaggacgtcttcatatccttaaagaaatggaaaaagcaatt
aatcaatccaggacatcagttaaagacaatgcacctcggattgtcagtatccaaattaat
aaagagcgcattcgtgaccttattggaccaggtggcaaggtcattcgagagatttgtgaa
acgacaggaactaagattgatattgctgaagatggaaaggttgatatttcaagctccaat
caagctaatattgaagccgctattgaaagaataaaagctgtggctggcgaccctgaagtt
ggcgcaatttataaagcttctgtcgttaaaatcatggattttggtgctttcgttgaatat
tatggcgagcgtcaaggccttgttcatgtgagtcaattggcagcaacaagagttgagaaa
gttgacgatgtcgttaaagttggcgatactgtttatgttaagctattaggctttgatgat
cgtggtaaagctaaactaagcatgaaagttgttgaacaagagtctggtcaagaaattgaa
ggctag
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