Candidatus Paracaedimonas acanthamoebae: IM40_04800
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Entry
IM40_04800 CDS
T03240
Name
(GenBank) (dimethylallyl)adenosine tRNA methylthiotransferase
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caq03016
]
IM40_04800
Enzymes [BR:
caq01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
IM40_04800
Transfer RNA biogenesis [BR:
caq03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
IM40_04800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
AIL12975
LinkDB
All DBs
Position
complement(923749..925137)
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AA seq
462 aa
AA seq
DB search
MPNIKKKKKLYIKTYGCQMNVYDSERMADLLKPLGFIITELPEDADMVILNTCHIREKAS
EKVYSELGRIREYKEAKRLKDQNMVIAVAGCTAQAEGEEILRRAKYVDVIVGPQSYYRLP
QILAEIERKTVVGEGPGRGILEIDFPVESKFDFLPESAEPQSVSAFLSIQEGCDKFCHFC
VVPYTRGAEYSRPVETIYEEACRLVEKGVQEITLLGQNVNAYHGTFSDREGWTLGRLIQY
LSKIQALKRIRYVTSHPADVNEEQINAHRDIEKLMPYLHLPIQSGSDRILKLMNRKHTAS
YYLDVIGKLRSARPDIAFSSDFIVGYPGETDKDFEDTLELVAKVNFASAFSFKYSPRPGT
PASVLDDQVPEEVKTERLARLQSLLFEQQTAFNQSFIGKSISVLFEKQGRHPGQLMGRSP
YLQSVYVEAAPRLIGQCVNILVTHASQNSLTGTVITQEKIAI
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatataaagaagaaaaaaaaattatatattaaaacttatggatgccaaatgaac
gtttatgattcagaacgtatggcagacttgttgaaacctctaggatttataataacggag
ttacctgaagacgctgatatggtaatcttaaatacctgtcatattcgtgaaaaagccagt
gagaaagtttactctgaattaggtcgtattcgagagtataaagaagcaaaaagattaaaa
gatcaaaatatggttattgcggttgctggttgcacagctcaagctgagggagaagaaatt
ctcagacgcgcaaaatatgttgatgtaatagtaggtccccaaagttactaccggctgcca
caaattctggcagaaatagaaagaaagaccgtagtaggcgagggtcctggacgaggtatt
ttagagatagattttcctgttgagagtaaatttgatttcttgccagaatctgcggaacct
cagagtgtatctgcatttctctcaatccaagaaggttgtgataagttttgtcatttttgt
gttgttccttatacaagaggtgcagaatattccaggccagttgaaactatttatgaagaa
gcttgtcggctcgttgaaaagggagtgcaagaaattacacttcttggacaaaatgtgaat
gcataccatggtacattttctgatagagaaggttggactctaggaaggctcatacaatac
ctttcaaaaattcaagcgcttaaacgaatacggtatgtaacctcgcatcccgcagatgtg
aatgaagagcaaattaatgcacatcgcgatattgaaaagcttatgccatatttgcactta
cctattcaatcaggatctgatcgaatacttaaactgatgaatcgtaagcatactgcctca
tattatttagatgttattgggaagcttagatcggcacgacccgatattgcattttcttca
gattttattgtaggttaccctggtgaaacagacaaagattttgaagatacactcgagctt
gtagcaaaggtaaattttgcctctgctttttctttcaagtatagtcctcgtccaggaact
cccgcctcggtgttagacgatcaagtgccagaagaagtaaaaacagaacgtcttgcacga
ctacaatctttattatttgaacaacagacagcatttaatcaatcttttatagggaagagt
atctctgtactttttgaaaaacaggggcgtcatcctgggcaattgatggggagaagccct
tatttgcagtctgtttatgttgaagctgcgccacgtttaattggacaatgtgtaaatata
ttggtcacgcatgcaagccaaaatagtttgacaggtacagtcataacgcaagagaaaatc
gccatataa
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