Candidatus Paracaedimonas acanthamoebae: IM40_06210
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Entry
IM40_06210 CDS
T03240
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM40_06210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caq03021
]
IM40_06210
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_06210
Enzymes [BR:
caq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM40_06210
Transcription machinery [BR:
caq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM40_06210
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM40_06210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AIL13184
LinkDB
All DBs
Position
complement(1191250..1195434)
Genome browser
AA seq
1394 aa
AA seq
DB search
MNNLMNIFGQVKTAANFDHLKISIASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRDRMGHIELATPVAHIWFTKSL
PSRVAQLLDLTMKDLEKVLYFESYIVVEPGLTPLKQRQLLTEEEVVDAQDEYGEDAFTAG
IGAEALKAMLSQIDLESEQKNLREELYETTSEMRRKKLVKRLKIVEAFLESGARPEWMVL
DVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRML
QESVDALFDNSRRARPIAGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKRMALELFKPFVYSRLERYGLASTIKAAKRMVERERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLE
SRVLMMSTNNILSPASGRPIIVPTKDIVLGLYYLTMMRESEKGEGMTFASIGELEQALNA
GLVSLHAKIKVRYYGVDAEGKKTSAIVETTPGRFILSDIYPRHPNLGFEIINCLLTSKDI
TKLIDVVYRHCGQKETVIFTDRLMALGFKYATHAGVSFGKDDLLIPADKEQLVNETHDMV
AKYEQQYLDGLITQGEKYNKVVDAWAQCSEKVAQAMMKGLSDVETGKPVNSVYMMAHSGA
RGSAAQMKQLAGMRGLMTKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKT
ANSGYLTRRLVDVAQDGVITIEDCGTENGISVKAVVEGSEVLTPLSERVLGRTILEDLID
PATEEVIARKGETLDEVHIERLEQTSIDEIRIRSALTCEAETGICGNCYGRDLARGTRVN
MGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQGAGEKSSIESSIDANVEISNRNVVINSE
GIPIVMNRYCEVILKDSKDRERARYKLPYGARILADDGTKVKKGQKLAEWDPFTLPIITE
TDGVVHYVDLVDGVSMREIMDETTGIASRVIIDWRQQPRGANLKPRLALRDKKGEALMLP
SGVEARYFLPVDAILNVDNNTEVKAGDIIARIPRESSKTRDITGGLPRVAELFEARMPKD
HAIISEIDGRVEFGKDYKTKRRIRVVPMEGHGEPLEYMIPKGRHVTVFEGDYVKRGELLV
DGNPVPHEILRILGVEALASYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKIEIEDPGD
STYLVGEHVDRREFNDICDRLLKENLRPAIGHPVLQGITKASLQTESFISAASFQETTRV
LTEAAVAGKIDNLIGLKENVIVGRLIPAGTGSVINHLKRVAGKLDRERISQEENASETAL
PTTVDEAETSPQAL
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttaatgaatatatttggccaggtcaaaactgctgcaaactttgaccatctt
aagatctcaatagcaagtcctgaaaagattcgctcttggtcttatggtgaagtaaaaaag
ccagaaacaattaactatcgtacatttaaacccgagagagacggccttttctgtgcgcgt
attttcggtcctgtaaaagattacgaatgcttatgtggtaagtataagcggatgaaatac
cgcggaattatctgcgaaaaatgcggcgttgaagtcacgctttcaaaggttcgtcgagat
cgtatgggccatattgagctggcaacacctgtcgcacatatctggttcacgaaatcgctt
ccaagtcgtgttgcccagttgcttgatctcacaatgaaagaccttgagaaagtcctttat
tttgaaagttatattgtggttgagccaggtttaactcctctaaagcaacgccagcttttg
acagaagaagaggttgttgatgctcaagatgaatatggagaagatgcctttaccgcagga
attggtgcggaagcgcttaaagcaatgctttctcaaattgaccttgaaagtgagcaaaag
aaccttcgtgaagagctttacgaaacaacgtcagaaatgcgtcgtaaaaaactcgttaag
cgcttaaaaatagttgaagctttccttgaatctggcgctcgtcctgagtggatggtcttg
gacgttttgcctgtcatccctcccgagcttcgcccacttgtgccacttgatggtggccga
tttgcgacatccgatctcaatgatttatatcgtcgtgtgattaaccgtaataatcgtctg
cgtcgtcttatggagttgcgtgcaccggatattatcattcggaacgaaaagcgaatgctt
caagaatcggttgatgcgttatttgataacagtcgtcgtgcacgtcctatcgcgggcgcg
aataagcgtcctttaaaatctttggcggatatgctcaaaggaaaacaaggtcgtttccgt
cagaacttgcttggaaaacgtgttgactattcaggacgttctgtcatcgttgtcggccct
gaacttaagctccatcagtgcggtcttccaaaaagaatggcgttagagcttttcaagcca
tttgtttattctcgtcttgagcgttatggccttgcaagcacgattaaggcagcgaagcgt
atggttgagcgtgagcgtccagaagtttgggatattcttgaagaagtcattcgcgaacat
cctgtgcttttaaatcgcgcaccaaccctccatcgtcttggtattcaagcctttgagcct
attttaattgaaggaaaagcaatccaattacaccccttagtctgtacagcttttaacgca
gacttcgatggtgaccaaatggcggttcacgttcctctttcaattgaggcccaacttgaa
tctcgcgtgctgatgatgtcaaccaacaatattttgagccctgctagcgggcgccccatt
atcgtgcccacgaaggatattgtgcttggcctttactatctcacaatgatgcgtgagagt
gaaaaaggtgaagggatgacctttgcatctattggagagcttgagcaagccttgaatgcg
ggtctcgtctccttgcacgcaaaaattaaggttcgttactatggtgtggatgcagaagga
aagaagacatctgcaatcgttgaaacgaccccaggacgttttatcttgtctgatatttat
cctcgtcatccaaatttgggatttgaaatcattaactgcttattgaccagcaaggacatt
acaaagcttattgatgttgtttatcgtcattgcggccaaaaagagacagttatcttcacc
gatcgtctgatggcacttggctttaaatatgcaacccatgcaggtgtttcatttggtaaa
gatgatctcttgatcccggctgataaagagcaactcgttaacgaaacgcatgacatggtt
gcgaagtatgaacagcaatatcttgatggtcttatcacgcaaggtgagaagtacaacaag
gttgttgatgcttgggcacaatgctctgaaaaggttgcgcaagctatgatgaaaggcttg
tcggatgttgagacaggaaaacctgtaaactcagtttatatgatggctcactcaggagct
cgtggttcggcagcccagatgaagcagttggctggaatgcgcggattgatgaccaagcct
tctggtgaaattattgaaacaccaattatttcaaactttaaggaaggcttgaccgttctt
gagtacttcaactcaacgcacggtgcacgaaagggtctttctgatacagcgcttaagacc
gcaaactcaggatacctcacacgtcgtctcgtcgacgttgcccaggatggggtcattacc
atcgaagattgtggcacagagaatggtatttctgtgaaggcagtggttgaaggcagcgaa
gttcttacacctctctctgagcgtgttttgggacgtaccattctggaagatttgattgat
cctgcaacagaagaagtgattgcacgaaagggtgaaactcttgatgaggttcatattgaa
cgtcttgaacaaacaagtatcgatgagattcgcattcgttctgccctgacctgtgaagca
gaaactggaatttgtggaaattgttatggtcgcgacttggcgcgtggtacacgcgtcaat
atgggcgaagccgttggtgttattgctgcgcaatccattggtgagcctggaacacagctt
acgatgcgtacgttccacattggtggaacagcacaaggtgcgggtgagaaatccagcatt
gaatcctccatagatgccaatgttgagattagtaaccgtaatgtggtcataaacagtgag
ggaattccgattgtaatgaaccgctactgtgaagtgatcttgaaagattcaaaagaccgt
gagcgggcgcgttataagcttccttatggtgcacgtatccttgcggatgacggtactaaa
gtgaaaaaaggtcaaaagttagcggaatgggatccctttacgcttccaatcatcactgaa
acagacggtgtcgttcattatgtggacctcgttgatggcgtctcgatgcgtgagatcatg
gatgagacgactggaattgcaagccgcgtgatcattgattggcgtcaacaaccacgcggg
gcgaacctgaagccacgtcttgctcttcgggataagaaaggggaagcattgatgcttcca
agtggtgttgaagcccgatatttcttacctgtggatgcaatcttgaatgttgacaataac
actgaggttaaagccggtgatattattgctcgtattccaagggagagctcaaaaacacgc
gatatcacaggtggtttgcctcgtgttgctgagcttttcgaagctcggatgccgaaggat
cacgccatcatcagcgaaatcgatggacgtgttgaatttggtaaagattataagacaaag
cgtcgtattcgtgttgtcccgatggaaggccatggagagccattagaatacatgattcca
aagggtcgccatgtcactgtttttgaaggggactacgtcaaacgaggtgagttacttgtc
gatggaaatcctgtgcctcatgaaattttacgtattcttggtgttgaggcattggccagc
tatttgatcaatgaaattcaagaagtttatcgtcttcaaggtgtgaagattaacgataag
catattgaagtgatcgtccgtcaaatgcttcaaaaaattgagatcgaggacccaggtgat
tcaacgtatcttgtgggtgagcatgtggaccgtcgtgaatttaacgacatctgtgatagg
cttcttaaagagaacttaaggccggctattgggcatcctgttcttcaaggtattacaaaa
gcttcgcttcaaacagaatcgtttatctccgcggcatctttccaagaaacaacacgtgtt
cttactgaggctgcagttgctggaaagatcgataatttgattggattgaaagaaaacgta
attgtgggacgcttgattccagcagggacaggaagtgtcattaatcatttgaagcgagtt
gctgggaagcttgatcgggaaagaatttcacaagaagagaatgccagtgaaacggctttg
ccaacgactgtagatgaagctgaaacttcgccacaagcactataa
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integrated database retrieval system
