Candidatus Paracaedimonas acanthamoebae: IM40_07050
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Entry
IM40_07050 CDS
T03240
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
IM40_07050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_07050
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
IM40_07050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_29
DUF5817_CT
Motif
Other DBs
NCBI-ProteinID:
AIL13305
LinkDB
All DBs
Position
complement(1336013..1338628)
Genome browser
AA seq
871 aa
AA seq
DB search
MMAQYHRIKADHPDNLLFYRMGDFYELFFEDAIKAAQALDIALTKRGKNEGEDIPMCGVP
AHAVEGYLARLVRQGFRVAICEQVENPEEAKKRGPKAVVARDVIRLVTPGTLTEDTLLEA
RRHNFLCVLIEDQAQKDHKFALSFMDISTGAFFVESCAREKLPEVLARISPSELIISEKL
CKKEELFEIFGMWKSILYPQAESRFDHRNAQKRLHEIYGIKTLEGYGTFLPHEITAAGAL
LEYVSLTQKGGMPKLCPLRRLKATEFMEIDAATRRNLELTTTQQGEYKGSLLSVIDKTLT
AQGGRLLALHLSHPLTNIMRLKTRLEMVKFLKENTTLRADIREILKATPDFERSLSRLSL
GRGGPRDLAALREGIKIASMLQAQLKLLKELPQGVVKIQYSLGEHSILIDRLTRALADDL
PYFARDGGFIQKGYHEGLDEARLLKEEGRKLIVNLQTKYAQELGIPSLKVKHNNIVGYHI
EVTAAQAAKIGPTFIHRQTMANAMRFTTVELTEFEQKLNSASEQVLALELKLFDDLVIEV
LGRAHEIQEAGQAIANLDVSVSLAQLAVTESYCCPEIDDSIAFEIIEGRHPVVEASLKQA
NASKFVTNNCVMAEQASIWLLTGPNMAGKSTFLRQNALIVLLAQIGSFVPATKAHIGIVD
RLFSRVGASDDLARGHSTFMVEMVETAAILNQATKRSLVILDEVGRGTSTYDGLSIAWST
LEHLHDVNQSRALFATHYHELTELEEKLKNLKCYTMRVKEWQGDVIFLHEIIEGAADRSY
GLHVAKLAGMPSSVLKRAEILLNDLENKKAKQGKVKISELPLFTVPSVALPPYQSPLEEK
LKALSLDEMTPRQSLEILYELRALIKDSNVA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgcaataccatcgaattaaagccgatcacccagataatcttttgttttatcgg
atgggagatttttatgagcttttttttgaggatgccattaaagccgctcaagctttagat
attgctctgacaaagcggggtaagaatgaaggagaggatatccctatgtgtggggtgccg
gctcatgctgttgaagggtatcttgcaaggcttgttcggcagggatttcgcgtcgctatt
tgtgagcaagtggaaaaccccgaagaggctaaaaaaagaggcccgaaagccgttgttgcg
cgcgatgtcatacgtcttgtaacgcctggcacgctgacagaagatactttactagaagca
cgccgccataattttctttgtgttctcatcgaggatcaagcacaaaaagatcataaattt
gctttaagctttatggatatttcaacaggtgccttttttgttgagagttgcgcgcgtgag
aagttacctgaagtgcttgcgaggatttctccttcagaactgattatttcagaaaaatta
tgtaaaaaagaagagctttttgaaatttttgggatgtggaaaagtattctttatcctcaa
gcagaaagccgttttgatcatcgtaatgcacaaaaacgacttcatgagatctatgggatc
aaaacgctcgaggggtatgggacatttctgcctcatgagataacagcagctggggcttta
ttggaatatgtttctctgacccaaaaaggagggatgccaaaactttgtccattgcggcgt
cttaaagcaacagagtttatggaaatcgatgcagcaacaaggcgcaatcttgaactgacc
acgacccagcaaggggagtataaaggaagccttcttagcgtgattgataaaacattgacg
gcgcaggggggaaggctcttagctttacatctctcccatcctctgacgaatataatgcgc
cttaaaacgcgtcttgaaatggttaaattcctcaaagaaaatacgacattgagggcggat
ataagggaaatattaaaagcaaccccggattttgaacgttctttatcacgccttagtctt
gggcgtggagggccaagagatttagctgccttgcgcgaagggataaaaattgcctccatg
cttcaagcgcaactaaaactcttgaaagagctgccacaaggtgttgtaaaaattcagtat
tctctgggcgaacattctattctgattgatcggttgacaagggctttagcggatgatctc
ccttactttgcaagagatggtggatttattcaaaaaggatatcatgaagggcttgacgaa
gcgcgacttttaaaagaagaaggtcgaaaattaattgttaatttgcagacaaaatacgcg
caagagcttggtattccttcgttaaaagttaagcataataatattgtgggatatcatatc
gaagttacagcagcgcaagccgcaaaaattggccccaccttcattcaccgacaaacaatg
gcaaatgcgatgcgctttaccactgtcgagctgacagagtttgagcaaaaactaaattca
gcctctgaacaggtgttggcgcttgagctaaaattattcgatgatctcgtgatagaagtg
ctgggtagggctcacgaaattcaggaagcaggccaagcgattgcaaatttagatgtctca
gtttccttggcacaacttgctgtgactgaaagttattgttgccctgagattgatgattca
atcgcttttgaaattattgaggggcgccaccctgttgtggaggcttcccttaaacaagca
aatgccagcaaatttgtgacaaataactgtgtgatggctgagcaagcaagcatatggctc
ttaacagggccaaatatggcagggaaaagtacgtttttaagacaaaatgcccttattgtt
ctcctggcgcagataggttcttttgtgccagcgacgaaggcgcatattggcatcgttgat
cggcttttctcacgcgtaggagcatccgatgatctggcgcgaggacattcaactttcatg
gttgaaatggtcgagaccgccgctattttaaatcaagcaacaaagcgttcccttgtaatt
ctggatgaagtggggcgtggaacttccacctatgatgggctttcaattgcttggtcaaca
ttagagcatcttcatgatgtgaatcaaagccgggctcttttcgcaacacattatcatgag
cttactgagcttgaagagaagctcaagaatttaaaatgctacacgatgcgtgtgaaagag
tggcaaggcgatgttatcttcttacacgagattattgaaggtgccgcagatcgttcttat
gggcttcatgtagcgaaactcgccgggatgccttcttctgtgttaaaacgggctgaaatc
cttttaaatgaccttgagaataagaaagcaaaacaagggaaagtaaaaatttctgagctc
cctttatttacagtgccttcagtggcgctccctccttatcaatcgcctcttgaagagaaa
ttaaaggctttatcgctggatgaaatgacgccacggcaaagtttggaaattttatatgaa
ttacgggctttgataaaagacagcaatgtagcctga
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