Candidatus Chazhemtobacterium aquaticus: MICH65_0017
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Entry
MICH65_0017 CDS
T06470
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
caqa
Candidatus Chazhemtobacterium aquaticus
Pathway
caqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICH65_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caqa03021
]
MICH65_0017
03019 Messenger RNA biogenesis [BR:
caqa03019
]
MICH65_0017
Transcription machinery [BR:
caqa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MICH65_0017
Messenger RNA biogenesis [BR:
caqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MICH65_0017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Mor
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QHO62998
UniProt:
A0A857NF95
LinkDB
All DBs
Position
complement(31459..32640)
Genome browser
AA seq
393 aa
AA seq
DB search
MNPASKNSEVVEGAKVEEIKGILDIEGADNHGVVRPFFKPSDRDAYISGNQVRTLGLREG
DEISGLAREPKNGGERYWMLTKITEVNGSKSLRELSRRPKFDYLTPVYPNEKLKLETDKE
PLSTRLIDLVAPIGKGQRGMIVSPPKAGKTTVIKEMSTGIALNYPDVHLMAVLIGERPEE
VTDISRHIEAVTKKSKRLGETAASNFDEKPEDQVLVAEMALDRARRLVEMGGDVVILLDS
VTRLARAYNLAMPTSGRTLSGGFDPAALHPPKRFFGAARNMEKGGSLTIIGTALVDTGSR
MDDLIYEEFKGTGNMELVLDRKLAERRIYPAVDVMASGTRREDLLFNNGEYQSIILMRRM
LDMLNPDERAEVMVERLKKTKSNKEFLASLKEG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagcaagtaaaaatagcgaggttgttgaaggagctaaagtggaggagattaag
ggtattttggatattgaaggagcggataatcatggagtggtgaggccattttttaagcca
tctgatagggatgcgtatatttctggtaatcaggttagaacattgggattgcgagaaggt
gatgagatttctggattggcaagagagcctaagaatggaggagagcgatactggatgttg
actaaaattactgaggtaaacggatccaagagtttgcgtgagctatcaaggcgacccaag
tttgattatttaactccggtatatcctaacgagaagttgaagttggagactgataaggag
cctttgagtactagattgattgatctagtggcaccgattggtaagggccagagaggtatg
attgtgtccccacctaaggctggaaaaacgactgtgattaaagagatgtcgactggtatt
gcgcttaactatccagatgttcacttgatggcggtgttgatcggagagaggcctgaggag
gtgacggatattagccggcatattgaggccgtgactaagaaaagcaagaggttgggtgag
acggcggcaagtaactttgatgaaaaaccagaggatcaggtattggtggctgagatggct
ttggacagggctcgaagattggtggagatgggtggagatgtggtgattttgcttgattca
gtcacgagattggctagggcatataacctggcgatgccgacttcaggacggacgttgtct
ggtggttttgatccagcagctttacacccgccaaagagattctttggagcagccagaaat
atggagaaaggtggatcactgactattattggtacggctttggtggatactgggtcgaga
atggatgatttgatttatgaggagtttaagggaacaggcaacatggagctggtactggat
cgcaagttggcggagaggagaatctatccagcggttgatgtaatggcctcaggaaccaga
agagaagatctgttgtttaacaatggtgagtaccagagcatcattttgatgcgacggatg
cttgatatgcttaatccagatgaaagagctgaggtaatggtggagagactcaagaaaacc
aagagtaataaggagttcttggcatcattgaaggagggttag
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