Candidatus Chazhemtobacterium aquaticus: MICH65_0300
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Entry
MICH65_0300 CDS
T06470
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caqa
Candidatus Chazhemtobacterium aquaticus
Pathway
caqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MICH65_0300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caqa03021
]
MICH65_0300
03400 DNA repair and recombination proteins [BR:
caqa03400
]
MICH65_0300
Enzymes [BR:
caqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MICH65_0300
Transcription machinery [BR:
caqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MICH65_0300
DNA repair and recombination proteins [BR:
caqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MICH65_0300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QHO63281
UniProt:
A0A857NCQ4
LinkDB
All DBs
Position
301408..305139
Genome browser
AA seq
1243 aa
AA seq
DB search
MTNNLKNLMDFQGLQIKLASPEEIKSWSHGEVTKPETINYRTLKPEKDGLFCERIFGPTK
DWECYCGKYKRIRYRGIVCDKCGVEVTLSRVRRERMGHISLAAPVAHVWYFKGTPSTLSL
LLNISPKKLASVVYFSRYLVLNVDKDEKQNALKKLEDARQAQKDQIKSDADQQIETIKSE
GKTQVETLRRSISNKDEKNLKTESAKLETKKKIAATREQMVAEQTVTDNIYDTIESLVKQ
IETNSVLTEDEYLKLVDYDAASFLTVGMGAEALLEAVKKVNLEELANKLKTIIKDGSVGK
KLKATKRLKVVMGLINASVSPEWMIFRQLPVIPPDLRPMVQLSGGRFATSDLNDLYRRVI
NRNNRLKHLLSLGAPEIILRNEKRMLQEAVDALIDSPQSLASRRTRRTKPLKSLSEMLKG
KQGRFRQNLLGKRVDYSGRSVIVVGPELSLNQCGIPKDMALEMFKPFVMRELIAKGLAPN
VKSAKNLIEHRIPEVYDILEEITKNHPVLLNRAPTLHKLSILAFNPVLIEGSAIRLHPAV
TDGFNADFDGDQMAVHVPLTKKAQEEARNQMLPQHNLLKPSVGKPVAIPAKKEMAIGVYY
LTSIEENQEANQDTIYADPKEVLLAYNIGLLHLRQPVQLRLNGKVIITTPGRIIFNEVVP
QEFGYINETITSSTIKSLFARSIKELGSDRVVKLIDDIKDIGFEAGTISGLSFAISDNEL
YQKKQAVIQQGNQQVAQVEQNYAQGLITDQERRRLSNEVWMRITDELSDLTWETFRPGNP
IRLIIETGMGRITRDTIKQLSAMRGLVTDPLGNIVELPIKGNYREGLSIFEYVNSIRGSR
KGLIDTALKTADAGYLTRRLVDASHDAIIREQDCGTKDGITISTQGPRGDKFADRLVGRF
TLKKILHPKTKKQILSANQIIDDEAVKQIIEANITEVEVRSPLTCESRFGVCVHCYGLNF
ANLEITQIGDPVGILAAQSIGEPGTQLTMRTKHTSGSVGLDVTQGLPRVTELLEVRTPKN
LSPIAEVAGKAKILETDSGYRITITPTIGGKDQRREYLVPLTSVLNIEDGQLVPAGHPLA
SGNLDVKQVLKVKGLRAAQEYLVNEAQRVYESQGIPIKDKHFEVIVKKMSDKVKIETPGD
TDLLPGQVVSRGRFDAINESVIAEGGQPATAGVLILGLIQSSLYTESWLSSASFQDTTKV
LTRAAIEGDTDPLLGMKENVIIGRLIPTNAERAEIKDGLLVNQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaatctaaaaaatctaatggactttcaaggacttcaaattaaacttgcctct
ccagaggaaatcaagtcctggtcacacggtgaagtcaccaaacctgaaaccattaattac
cgcaccctcaaacctgaaaaagacggtctgttttgtgagcgcatctttggaccaactaaa
gactgggagtgttattgtggcaaatataaacgcattcgttatcgtggcatagtctgcgat
aaatgtggagtagaagttactctctctcgtgttcgtcgcgaaagaatgggtcacatttcc
ttagctgctccagttgcccatgtctggtatttcaaaggcaccccgtctaccctttccctc
cttcttaatatctcacccaaaaaactagccagcgttgtttatttctcacgatatcttgtt
ctaaatgtggacaaagatgaaaagcagaatgctcttaaaaaacttgaagatgctcgtcaa
gctcaaaaagaccaaattaaatctgatgctgatcaacaaattgagaccattaagtcagag
ggtaaaactcaagtggaaactcttcgtcgctctatctccaacaaagacgaaaaaaacctc
aagaccgaatctgccaagctcgagactaaaaagaaaattgccgccactcgcgaacagatg
gtcgccgaacaaaccgtcactgataatatctacgacaccatagaaagtcttgtcaaacaa
atcgaaaccaactccgtcttaaccgaagacgaatatctcaaacttgtcgattacgatgcc
gcgtccttccttactgttggtatgggcgccgaagccttacttgaagctgtcaaaaaagtt
aaccttgaagaacttgctaataaacttaaaaccatcatcaaggatgggtctgtcggtaaa
aaactaaaagcaaccaaacgacttaaggtggtcatgggtctgatcaatgcttctgttagt
cccgagtggatgattttccgccaactacccgttattcctccagacctccgtcccatggtt
cagctttcaggtggacgctttgccacctccgaccttaacgacctatatcgcagggtcatt
aatcgtaacaatcgtctaaaacaccttttaagtctaggtgcccccgaaatcatattacga
aatgaaaaaagaatgcttcaggaagctgttgatgccttaattgattcccctcaatcgctc
gcctctcgtcgtactcgtcgcaccaaaccacttaaatctctttcagaaatgttaaagggt
aaacaaggtcgttttcgccaaaacttgctcggtaaacgtgttgattactccggccgctca
gtcattgtcgttggcccagaacttagtttgaatcagtgcggtattcccaaagacatggct
cttgaaatgttcaagccctttgttatgagagagcttatcgccaaaggtctagctcccaat
gttaaatctgctaaaaacttaatcgaacaccgcattcctgaggtctatgacatcttggag
gaaatcaccaaaaatcatcctgtgttactaaaccgtgctccaactctccacaagctttcc
attctcgcctttaatccggtccttattgaaggctctgctattcgccttcatcccgcggtt
accgacggttttaacgctgactttgatggcgaccaaatggctgttcacgtacctctaact
aaaaaagcccaagaagaagccagaaaccaaatgcttccacaacacaatctactcaaacct
tccgttggtaaacctgttgctatccctgccaaaaaagagatggccattggtgtttattac
ctcacttctatcgaggaaaaccaagaagccaatcaagacaccatctatgctgaccccaaa
gaagtcttgcttgcctacaatatcggacttcttcatctccgccaacctgttcaattgcgt
ctcaatggcaaagtaattattaccacccctggtcgaattattttcaatgaggtggtacct
caagagttcggatacatcaatgaaactatcactagctctactattaaatcactctttgcc
aggtcaattaaagaacttggatccgatcgagttgtcaagctaattgatgacatcaaagat
ataggcttcgaggcaggcaccatctcaggtctctcattcgccatctccgataacgaacta
tatcagaagaaacaagccgttattcagcaaggtaatcaacaagttgcccaggttgaacaa
aactatgctcagggactaatcaccgaccaggaacgacgtcgtctcagcaatgaagtctgg
atgcgcatcaccgatgagctctctgacctcacctgggaaaccttccgacctggcaatcct
attcgtctcatcattgagaccggaatgggacgtattaccagagacactatcaaacaactt
tccgccatgcgcggcttagttactgaccccttaggtaatattgtcgaattacctatcaaa
ggtaattatcgcgagggtctttctatctttgaatatgtcaactccatcagaggttctaga
aaaggccttatcgacaccgctcttaaaacagccgacgctggttatcttactcgccgactc
gtcgacgcctctcacgacgccattattagagaacaagactgtggcaccaaagatggaatc
accatctctacacaagggccacgtggtgataaatttgccgatcgacttgtaggccgcttc
actttaaagaaaatccttcaccccaaaaccaagaaacaaatcctctccgccaatcaaatt
attgatgatgaagcagtcaaacaaattattgaagcaaatataaccgaagttgaagttcgc
tctcctctaacctgcgaatcacgtttcggtgtctgtgttcattgctatggtctaaacttt
gccaatcttgaaatcactcaaattggtgatcctgttggaattctagctgctcaatccatc
ggcgaacctggcactcaacttaccatgagaaccaaacacacctctggctcggtcggtcta
gacgtgacccaaggtttaccccgtgttaccgaacttctcgaggtcagaacacctaaaaac
ctctcacccattgccgaagttgctggtaaagccaaaattcttgagactgactctggctac
cgtattactattactcctaccattggtggtaaggatcaacgccgcgagtatcttgtaccc
ctcacctcagttcttaatattgaagatggtcagctcgtgccagccggtcacccactcgcc
tcaggcaacctagacgttaaacaagttcttaaggttaaaggtctccgtgccgctcaagaa
tatctcgttaatgaagctcagcgagtctatgaatctcaaggtattcctatcaaggacaaa
cactttgaggttattgtcaagaaaatgtcggacaaggttaaaatcgaaaccccaggtgat
acggatctactgcccggacaggttgttagccgaggtcgctttgacgctatcaatgaaagt
gtcatcgccgaaggtggccagccagccacagcaggtgttctaatcttaggtctaattcaa
tcctccctttacaccgaatcatggctatcatccgcttccttccaagacacaaccaaggtt
cttactcgtgccgctatcgaaggggacactgatccactcctcggtatgaaagaaaacgtt
atcattggtcgtcttattcccaccaatgccgaacgtgccgaaattaaagacggtttgctc
gttaaccaataa
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