Candidatus Chazhemtobacterium aquaticus: MICH65_0638
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Entry
MICH65_0638 CDS
T06470
Name
(GenBank) DEAD-box ATP-dependent RNA helicase DeaD (CshA)
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
caqa
Candidatus Chazhemtobacterium aquaticus
Pathway
caqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICH65_0638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caqa03019
]
MICH65_0638
Enzymes [BR:
caqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICH65_0638
Messenger RNA biogenesis [BR:
caqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MICH65_0638
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
CMS1
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHO63619
UniProt:
A0A857N8D8
LinkDB
All DBs
Position
623753..624961
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AA seq
402 aa
AA seq
DB search
MYQQRNSFRSGSRGRHNRSNSNRSFGHNRSGRGRFQPKQLDPRLFIKPADAVQSEVAPVT
STFSDFKLPKQLVTNLSSMGFDTPTPIQDQALTPILNGHDLIGLADTGTGKTIAFVLPIL
AKLIKDPAQNALIIAPTRELAVQIKDDIKALSNGLPIKTVLLIGGTGIYRQIQELKRNPH
IFIGTPGRLKDLHERGSLNLNNTHTIVLDEMDRMLDMGFVKDITKLLSFLPKERQTLLFS
TTIDDRVEGIAHTFMNNPLKISVKTGATAQNVDQDVVHLSGSDKISVLKELLKQQRFQKV
LIFGRTKYGVEKLSVTLSQNGFSVGAIHGNKRQSQRQRVLTDFKTDRINILVATDVAARG
IDVKDITHVINYDQPDTYADYIHRIGRTGRAGKTGQALTFVE
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaacagcgaaatagttttcgttctggctctcgtggccgtcataatcgatctaac
tcgaatcgttcttttgggcataatcgatctggccgtggccgctttcagccaaagcagtta
gatcctcgtctcttcataaaaccagctgatgctgttcaaagtgaagtggcccccgtcacc
agtacctttagtgacttcaagctacccaaacagctagtcaccaatctatccagtatgggt
tttgacactccaacacccatccaggatcaagccttaacccccatccttaatggccatgat
ctaattggtttagctgataccggtactggcaaaactatagcttttgttctccccattctg
gctaaattaataaaagaccctgctcaaaatgctctaatcattgctcccactagagagcta
gctgtccagatcaaagatgatattaaagcgcttagtaatggtcttcccatcaaaactgtc
ctgttaattggtggtactggcatctatcgtcagatccaagagcttaagcgcaatcctcac
atcttcatcggcaccccaggcagactcaaagacctgcatgaacgtggttcactcaatcta
aacaacactcatacaatcgtactagatgagatggaccgcatgctggatatgggatttgtc
aaagacataaccaagttgttaagtttcttacccaaagagcgccagaccttgctcttctcc
accaccatagatgatcgagtagagggtatagctcatactttcatgaacaatccgctaaaa
atctcggtcaaaactggtgctacagctcagaatgtagatcaggatgttgttcatctctct
ggttcagacaagataagtgtcctaaaggaattgcttaaacaacagcgattccagaaagtc
ttgatctttggccgtaccaaatacggagtagagaagttaagtgtcactctatctcaaaac
ggcttttcagttggagctattcacggtaacaaaaggcagtctcaacgccaaagggttctc
accgacttcaaaaccgatcgaatcaacattctagttgccaccgatgttgcagccagaggt
attgatgttaaagacatcacccatgtcatcaactacgaccaacctgatacctacgcagac
tatatccatcgtattggcagaactggaagagcgggaaagactggacaagcactaactttt
gttgagtaa
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