Corynebacterium aquatimens: CAQUA_04885
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Entry
CAQUA_04885 CDS
T09232
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
caqm
Corynebacterium aquatimens
Brite
KEGG Orthology (KO) [BR:
caqm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caqm03019
]
CAQUA_04885 (hrpB2)
Enzymes [BR:
caqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CAQUA_04885 (hrpB2)
Messenger RNA biogenesis [BR:
caqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CAQUA_04885 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_19
HA2_C
AAA_22
HA2_N
nSTAND3
AAA_25
AAA_30
ResIII
AAA_11
ABC_tran
SLFN-g3_helicase
NACHT
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WJY65690
LinkDB
All DBs
Position
complement(1060267..1064247)
Genome browser
AA seq
1326 aa
AA seq
DB search
MSGGEKTRQRTGGRRRRNKRDWARLKAQRAAAVEAALPEIRYPAGLPVSDRREAIKTLIR
DNQVVIIAGETGSGKTTQIPKMCLELGRGREGLIGHTQPRRIAARTVAERIAEELGQEIG
ESVGYAIRFDDRVSDTTAVKLMTDGILLAEMQRDRLLRAYDTIIIDEAHERSLNIDFLLG
YLKQLLPRRKDLKVIITSATIDPERFAEHFGGAPIIEVSGRTYPVEIRYRPLEMEVAVKD
GGTKVVDVDMLDGLIDALTELMREGDGDILCFFASERDIRDAMEAIDGQNWRGVEVVPLF
GRLSNAEQHRVFAPHSGRRIVLATNIAETSLTVPGIHYVVDTGLARISRYSTRTKVQRLP
IEEISQASANQRSGRSGRIADGIAIRLYSEANFEARPEFTDPEILRTNLASVILQMISLR
LGDISEFPFIQPPDPKAIRDGLLLLHELGAITDRESNDAPTLTSIGRDLAKIPVDPRMAR
MLVEANRLGVLEDVTVIVANMTIQDVRERPLEFQAQADQAHARFRDKTSDFISTLNLWDY
LKDARDELSGNAFRKRMKKEYLHYMRIREWYDLVRQLRDVEKQLGWAQDQAGTARDPKEI
HQALLSGLLSNIGARDGNSKEFKGARGTRFMIFPGSALAKKPPEFVMAAELVETTRLWAR
DVAAIDPAWVEKLARDLLKHSYSEPVWSRKRAAPMVHQKSLLYGVTIVADRLVPYHRVDA
EGARDMFIRHALVDGEWTTHHKFAAHNAALLEQAAEIEEKIRRRGVVVDEETLFEFYDAR
VPAGVATGRHFDAWWKKKRREDPAFLDFDPNALIAEDVGAHMLHDGSYRTESAGFAGGAG
AAASDGRGEGSAGGAGAAASDGGAAGGGALDSAKLAFPDSWRQGTIDYELQYKFEPGDPF
DGVTVMVPVPLLAGLKDDGFDWLVPGLRLELFTELIRTLPKALRKTVVPAPDYAARALAK
AVPGQGRVVEQLAHILQSMGGHGIAAADFRPEAVPGHLRMTFAAVDRRGKITDHDKDLQA
LKTRRAGQIHSSVAKAGKRSETDVVREWTVDTLGDVPETVTTTIEGNKVDAYPALEAAAG
GVRVKVFPTKAAADASMVTATLTLLLRRIDVSTQQMLKGLPLRQRVAVEHYPHGGAAGLV
EDARVAAIRDALFAAGGPVRRPAEFEELVKTIKPTISGAVRRTIVSIAPGLVEYSNLAAE
LDNWHGPAIDDINRQMAFLLPKHAITIHGMEHLQHLPRYVQAIRVRLEDMALDPDRDAER
QATIDAAREYLDVRLRRLPKGREKSRAVKDILWRIEELRVSVFAQRLGTAKPVSQRRIEK
MVDKLS
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcgaaaaaacgcggcagcggactggtggccggcggcggcgcaacaaacgc
gactgggcacgcctgaaagcgcagcgcgcggcagcagtcgaggcagctctgccggagatt
aggtatccggcgggcttgccggtgtccgatcgtcgagaagcgattaaaacgctgatccgc
gacaaccaggtggtgatcatcgcgggtgagacgggctccggtaaaacgacgcagatcccg
aagatgtgccttgagctggggcgcggacgcgaggggctgattggccacacgcagccgcga
cgcattgccgcgcgcacggtggcggagcgcattgcggaagaactcggccaggagatcggc
gaatccgtaggctatgcgatccgcttcgacgaccgcgtctcggacacgacggccgtgaaa
ctgatgacagacggcatcctgctggccgagatgcagcgcgaccgcctgctgcgcgcctac
gacacgatcatcatcgacgaggcccacgaacgcagcctcaacatcgactttctgcttggg
tacctcaagcagttgttgccgcggcgtaaagatctgaaggtgatcatcacctccgcgacg
atcgacccggagcggttcgcggaacacttcggtggcgcgccgatcattgaggtctcgggg
cgcacgtaccccgttgagatccgctaccggccgctggagatggaggtcgcggtaaaagac
ggcgggacgaaggtcgtcgacgtggacatgctcgacgggcttatcgacgccctgacggaa
ctcatgcgcgaaggcgacggcgacatcttgtgcttcttcgcctccgagcgcgacatccgc
gacgcgatggaggcgatcgacggccagaactggcgcggcgtcgaggtcgtgccgctgttc
gggcgactaagcaacgccgagcagcaccgcgtgttcgcgccgcattccgggcggcggatt
gtacttgcgacgaacatcgctgagacgtcgctgaccgtgccgggaattcactacgtggtg
gacacggggctggcgcgcatttcgcgctactcgacgcgcaccaaggtgcagcgactgccc
atcgaggagatctcgcaagccagcgcgaaccagcgatcagggcgttcggggcgtatcgcg
gacggtattgcgattcgtttgtactcggaggcgaactttgaggcgcgtccggaattcacc
gacccggagatcttgcgcaccaacctggcgagcgtgatcttgcaaatgatctcgctgcgc
ttaggcgacatttcggagttcccgttcatccagccgccggacccgaaagcgatccgcgat
ggcctgctgctgttgcatgagctcggcgcgatcaccgaccgcgagagcaacgacgcgccc
acgctcacgtcgatcgggcgcgatctggcgaagatccccgtcgacccgcgcatggcccgc
atgctggtcgaggccaaccggctaggcgtgctcgaagacgtcacggtcatcgtggccaac
atgaccattcaggacgtgcgcgagcggccactggaattccaggcccaggccgaccaagcc
cacgcacggtttagggataaaacctctgactttatctccacgctgaacctgtgggactac
ctgaaggacgcgcgcgacgaactgtccggcaacgcgttccgcaaacgcatgaagaaggaa
tacctccactacatgcgtatccgggagtggtatgacctggtgcggcagctgagggacgtc
gagaagcaactgggctgggcacaggatcaagccggcacggcgcgcgacccgaaggaaatc
caccaggcgctgctgagcggcctgttgtccaacattggcgcgcgcgacggcaactcgaag
gaattcaagggcgcgcgcgggacgcggttcatgatcttccctggctctgcgctggcgaag
aaaccgccggagttcgtgatggcggcggagctcgtggagacgactcgcctgtgggcgcgc
gacgttgccgcgatcgacccggcgtgggtggaaaagctcgcgcgtgacctgctgaaacac
tcatattccgagcccgtgtggtcacgcaagcgtgccgcgccgatggtgcaccagaagtcc
ttgctctacggcgtgaccatcgtcgcggatcggctcgtgccgtatcaccgcgtggacgcg
gaaggcgcgcgcgacatgttcatccgccacgcgctcgtcgacggtgaatggaccacccac
cacaagttcgcggcccacaacgcggctcttttagagcaggccgcggagatcgaagagaaa
atccgccgccgcggcgtcgtcgtggatgaggaaacgctatttgaattctacgacgcccgc
gtgcccgctggcgtcgcaaccggacgtcacttcgacgcctggtggaaaaagaaacgccgc
gaagacccggcctttttggactttgacccgaacgcgctcattgcggaggacgtgggggca
cacatgcttcacgacggctcctaccgcaccgagtccgccggcttcgctggcggcgctggc
gctgccgccagcgacggaaggggcgaaggtagtgctggcggcgctggcgctgccgccagc
gacggtggtgctgccggcggcggcgcgctggatagcgcgaagctcgcgtttcccgactcg
tggcggcagggcaccatcgactacgagctgcagtacaagtttgagccgggcgaccccttc
gacggagtcaccgtcatggtgcccgtacctcttctggcggggctgaaagacgacggattc
gactggctggttccggggctgcggttggagctgttcactgagctcatccgcacgctgccg
aaggcgctgcgcaagaccgtcgtgccggcgcccgactacgccgcgcgcgctctggcgaag
gcagtgccggggcaagggcgcgtcgtcgagcagctggcgcacatcctgcagtcgatgggc
gggcacggaatcgcggcggcagatttccggccggaggcggtgccgggtcatctgcggatg
acgttcgcggctgtcgatcggcgcggaaaaatcaccgatcatgacaaggaccttcaggcg
ctgaagacaaggcgcgcggggcagattcattcgtcggtggcaaaggctgggaagcgctcg
gagacggatgtggtgcgggagtggaccgtcgatacgcttggcgacgtccctgagaccgtg
accacaaccatcgagggcaacaaagtggacgcgtaccccgcgctggaggcggcggctggc
ggcgtgcgggtgaaagtcttcccgacgaaggccgctgcggacgcctcgatggtgaccgcg
acgctgacgctgctgctgcgtcgcatcgacgtgtcgacgcagcagatgctcaaaggactg
ccgctgcggcaacgcgtggccgtcgaacactacccgcacggcggcgccgcgggactcgtg
gaagacgcgcgcgtggccgcgatccgcgacgcactattcgccgcgggcgggcccgtgcga
cggcccgcggagttcgaggagctggtgaaaaccatcaaacccaccatcagcggggccgtg
cggcgcaccatcgtttcgattgcgcccgggctggtcgagtactcgaacctcgcggccgag
ctggataactggcacgggcccgcgatcgacgacatcaaccggcagatggcgtttctttta
cccaagcacgcgatcacaatccacgggatggagcacctgcagcacctcccccgctacgtc
caggccattagggtgcggctcgaggacatggcgttggaccccgaccgcgacgccgagcgc
caggcaaccatcgacgcggcccgggaatacctcgacgtgaggcttcgccgcctgcctaag
ggccgcgaaaaatcgcgcgcggtgaaggacatcttgtggcgcatcgaggagctgcgcgta
agcgtgttcgcgcagcggctcgggacggcgaaacccgtgagccagcggcggatcgagaag
atggtggacaagctcagctag
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