Corynebacterium aquatimens: CAQUA_05870
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Entry
CAQUA_05870 CDS
T09232
Name
(GenBank) ski2-like helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
caqm
Corynebacterium aquatimens
Brite
KEGG Orthology (KO) [BR:
caqm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caqm03019
]
CAQUA_05870
Enzymes [BR:
caqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CAQUA_05870
Messenger RNA biogenesis [BR:
caqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CAQUA_05870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WJY65881
LinkDB
All DBs
Position
1271826..1274603
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AA seq
925 aa
AA seq
DB search
MSHLDEYRAAKSFPLDPFQIEACEAVEEDHGVLVCAPTGSGKTVVGEFAVSLALSRGTKC
FYTTPIKALSNQKYHDLVDKHGEDAVGLLTGDVSINGSAEIVVMTTEVLRNMIYASSPAL
DRLSHVVMDEIHYLADRERGAVWEEIILNLDESVRIIGLSATVSNSEEFGEWLDEVRGDT
KVIVSEHRPVPLNQFMMVQRKIYPLFEPGTDTGQVNRELLHVVERLESASANAGRADYES
GKGFRSRTQGRRGGDSRSGNTRPQDRVRPVGRPEVVSALAGRDMLPAIVFIFSRAGCDGA
LFQCLRSRKEMTTPEEAELITQIADDGVADIPEEDLEVLQYRQLRTAWSRGFAAHHAGLL
PAFKHIVEELFVRGLVKVVFATETLALGINMPARTVVLEKLVKFNGDSHADLTPGQYTQL
TGRAGRRGIDTIGNAVVQWSPAMDPREVAGLASTRTYPLISLFTPGYNMAINMLKMNGYD
DSIALIEKSFAQFQTDRSVVGEVRDVERLRTKVSRLREDLDEAIAQYAPPTEEGEDAAEV
LVEYLDLRKELSEAEKEGRRESIEQRHTEVQRVLGKLQVGDVIALPSKKRPELAAVVAPA
GRRDDPRPWVTTERGWSGRIDAAAFRNAPVVVGRIKVPRDVTDKPRKHTRKIVNELSRSR
FNAPKRLREESRNRPSSRVLALREAIRNHPAHAWPAADRERLARLGEEIVREQRSLDRAQ
KRIDKQTDTLGRTFERIIGLLTEYDYVELDGGEPTVTDEGERLARIHAVSDLLVAQCLKR
GIWDELDPAELAGVASMCVFENRKATQGYPEAATDRMADAMTDTMRIHGELASDEQRHRL
PPTSIPDPGFALSIHQWTAGAPLGYALAAAAESGAELTPGDFVRWCRQVIDLLEKIVVTG
YSDEIIHNARKAIDAIGRGVVAIGN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacctcgacgaatatcgcgctgcaaagtcgtttccgctcgatccgttccagatt
gaggcgtgcgaagccgtcgaggaagaccacggagtgctggtctgcgcaccgacgggttcg
ggaaagaccgttgtgggggagttcgcggtctcgctagccctatcacgcggcacgaagtgc
ttttacacgacgccgatcaaggcgttgagcaaccagaagtaccatgacctcgtcgacaag
catggcgaagatgccgtgggcctgctgacgggggacgtgagcatcaacggttccgcggag
atcgtggtgatgaccacggaggtcttgcgcaacatgatctatgcgtcctcgccggcgttg
gatcgcctgtcgcatgtggtgatggatgagatccactaccttgcggaccgtgagcgcgga
gcggtgtgggaagaaatcatcctgaacttagacgagtccgtgcgcatcatcggcttgtcc
gcaacggtgtcgaactccgaggaattcggcgaatggctcgatgaagtccgcggggacacc
aaggtcatcgtgagcgagcaccgccccgttccgctcaaccagttcatgatggtgcagcgc
aagatctatccgttgttcgaacccgggactgatacaggccaggtcaacagggaactgctt
cacgtcgtggaaagacttgaatccgcctctgcgaacgcggggcgcgctgattatgaatca
ggcaaagggtttaggtcgcgtacacagggccgacgcggtggggattcccggagtggaaac
actcggccgcaggatcgcgttcgcccggtgggacgtcccgaggttgtatccgctttggct
ggccgcgatatgctgcccgcgatagtcttcattttctcccgggcggggtgcgacggggca
ttgttccagtgcctacgcagccgaaaagagatgaccaccccggaggaagctgagctcatt
acccaaatcgccgacgacggcgtagcggacatccccgaagaggacttagaggtcctgcag
tataggcaactgcgtaccgcctggtcacggggtttcgctgcccaccacgcaggattgctc
cccgcgttcaagcacatcgtcgaagagctgttcgttcgcggactggtcaaagtagtcttt
gctacggagacactcgcgctgggcatcaacatgccggcgcgcacggttgtgttggaaaag
ttggtgaaattcaacggggattcccacgctgacttgacccccgggcagtacacgcagctc
accggacgcgcaggccggcgcggaattgacacgattggtaacgcagtggtgcagtggtcc
ccggcgatggatccgcgcgaagtagcgggcctcgcgtccacgcgcacgtacccgttgatt
tcgctgttcacgccgggctacaacatggccatcaacatgttgaagatgaatggctacgat
gactcgatcgcgttgattgagaaatccttcgcccagttccaaacggaccgctccgtcgtc
ggggaggtccgtgacgttgaacgactccgcaccaaagtgtcccgccttcgggaggacctc
gacgaggcgattgcccagtacgcaccaccaactgaggagggtgaagacgcagcagaggtt
ctggtcgagtacttggacctgcgcaaggagctctcagaagcagagaaggaagggcgccgg
gagtccattgagcagcgtcacaccgaagtgcagcgagtactgggcaagctccaagtgggt
gatgtgatcgcgcttccttcgaagaagcggcctgagctcgccgccgtggttgcgcctgct
ggcaggagggatgatcctcgtccctgggtcaccacggaacgtggctggtcaggacgaatc
gacgccgcggcattccggaatgcaccggttgtcgttgggcgcattaaggttccgcgggac
gttaccgataaaccccgcaagcacacccgcaagatcgtcaatgaactttcccgatctcgc
ttcaacgcgccaaagaggctccgggaagagtcgcggaaccggccgtcgtcacgcgtgctc
gccttgcgcgaagcgatccgcaaccatcccgcgcacgcctggcccgcggcggacagagag
cgcctcgcgcgcctcggcgaagagatcgtccgcgaacagcgatcgttggatcgcgcgcag
aagcgcatcgataaacagaccgacaccttgggccgcacgttcgagcgcatcattgggctg
ctgactgagtatgactacgtggagcttgacggcggcgagccgacggtgaccgatgaaggg
gagcggttggcgcgtattcatgctgtgtccgatctgcttgttgcgcagtgtctcaagcgc
ggtatctgggacgagcttgaccccgcggaactcgcgggtgttgcgtccatgtgtgtgttt
gaaaaccgcaaggcgacgcagggatatcctgaggccgccactgaccgcatggctgatgca
atgacggacacaatgcgcatccacggcgagctcgccagcgacgaacagcgccatcgtttg
ccgccgacgagcattcccgatccgggttttgcgctgtccatccaccagtggaccgccggc
gcgccgcttggctacgctcttgctgcggcggcggaatcgggtgctgagctcaccccgggt
gactttgttcgctggtgccgccaggtgattgatctcttagagaaaatcgtggtcacaggc
tattccgatgagatcattcacaatgcccgcaaggctatcgacgccattgggcgaggcgtt
gtcgcgattggtaactag
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