Comamonas aquatica: KAQ61_07965
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Entry
KAQ61_07965 CDS
T07338
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
caqt
Comamonas aquatica
Brite
KEGG Orthology (KO) [BR:
caqt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
caqt03009
]
KAQ61_07965 (rlmD)
Enzymes [BR:
caqt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KAQ61_07965 (rlmD)
Ribosome biogenesis [BR:
caqt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KAQ61_07965 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
Methyltransf_23
MTS
Motif
Other DBs
NCBI-ProteinID:
QTX22350
LinkDB
All DBs
Position
complement(1685202..1686707)
Genome browser
AA seq
501 aa
AA seq
DB search
MSDQNDKISPDTEYADMPAANPSLPEGWLEVVSMDMEAKGVARKPDGKVVFIDGALPTEL
VTANVHRKKNNWEAASLREIHRESAQRVQPGCPNFGLHDGACGGCKMQHMHVAAQVAVKQ
RVLEDNLWHLGKVKPETLLRPIEGPAWGYRYRARLSVRYVIKKGKVLVGFHERKSRYIAD
METCKVLPPHVDAMLMPMRALIASLDARETCPQIEVACGDHVTALVLRHLEPLSDADLQR
LRDFAAAQNVQWWLQPKGPDTVHLMDPVGPQLSYALPDFGITMPFKPTDFTQVNPHINRV
LVTRSLRLLDAQKSDRVIDWFCGLGNFTLPLATMAREVLGIEGSDALVQRSHENYAANNA
TRAQGDQLAPTRFVGRNLFNMTPALLMADGNADKWLVDPPREGAFALSKALADIHQIRIG
AKQTGVATQEQPDLLPPLPEGHEAWQFPERIVYVSCNPATLARDAGLLVHQAGYRCVAAG
VVNMFPHTAHVESMAVFERAH
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccagaacgacaagatttcccccgataccgagtacgccgacatgcccgccgcc
aaccccagcctgcccgaaggctggctggaagtggtgtccatggacatggaagccaagggc
gtggcccgcaagcccgatggcaaggtggtgttcatcgacggggctttgcccaccgagctg
gtcacggccaacgtgcaccgcaagaagaacaactgggaagccgccagcctgcgcgagatc
caccgcgaatccgcacagcgcgtgcagcccggctgccccaacttcggcctgcacgacggt
gcctgcggcggctgcaagatgcagcacatgcacgtggcggcccaggtggccgtcaagcag
cgcgtgctggaggacaacctgtggcacctgggcaaggtcaagcccgagaccctgctgcgt
cccatcgaaggcccggcctggggctaccgatatcgcgcccgcctgtcggtgcgctatgtg
atcaagaagggcaaggtgctggtgggcttccacgagcgcaagagccgctacatcgccgac
atggaaacctgcaaggtgctgccaccccacgtggacgccatgctgatgcccatgcgcgcg
ctgatcgccagcctggatgcgcgcgagacctgcccgcaaatcgaggtggcctgtggtgac
catgtcaccgccctggtgctgcgccacctggagccgctgtccgacgccgacctgcagcgc
ctgcgcgactttgccgccgcacagaacgtgcagtggtggctgcagcccaagggcccggac
accgtgcatctgatggacccggttggcccgcagctgtcgtatgcgctgccggacttcggc
atcaccatgccgttcaagcccacggacttcacccaggtcaatccgcacatcaaccgtgtg
ctggtgacacgttcgctgcgcctgctggatgcgcaaaagagcgaccgtgtgatcgactgg
ttctgcggcctgggcaacttcacgctgccgctggccaccatggcgcgcgaggtgctgggc
atcgagggctcggacgcgctggtgcagcgctcgcacgagaactacgccgccaacaacgcc
acgcgcgcgcagggcgatcagctggctccgacccgctttgtgggccgcaacctgttcaac
atgacgccggcgctgctgatggccgacggcaatgccgacaagtggctggtggaccccccg
cgcgagggcgcgttcgccctgtccaaggcgctggccgacatccaccagatccgcatcggc
gccaagcagaccggcgtggccacgcaagagcagcccgacctgctgcccccgctgcccgaa
ggccacgaggcctggcagttccccgagcgcattgtctacgtcagctgcaaccccgccacg
ctggcgcgcgatgccggcctgctggtccaccaggcgggctaccgctgcgtggccgccggc
gtggtcaacatgtttccgcacacggcccacgtggaatcgatggccgtgttcgagcgcgcc
cactga
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