Corynebacterium aurimucosum: cauri_1867
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Entry
cauri_1867 CDS
T00887
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
car
Corynebacterium aurimucosum
Pathway
car03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
car00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cauri_1867 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
car03019
]
cauri_1867 (rne)
03009 Ribosome biogenesis [BR:
car03009
]
cauri_1867 (rne)
Enzymes [BR:
car01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
cauri_1867 (rne)
Messenger RNA biogenesis [BR:
car03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
cauri_1867 (rne)
Ribosome biogenesis [BR:
car03009
]
Prokaryotic type
rRNA processing factors
cauri_1867 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
TcdA_TcdB
DnaJ_CXXCXGXG
Acyl-CoA_dh_N
Motif
Other DBs
NCBI-ProteinID:
ACP33460
UniProt:
C3PI06
LinkDB
All DBs
Position
complement(2068926..2072114)
Genome browser
AA seq
1062 aa
AA seq
DB search
MASKKKTEEARSESTLAAAVAGIDREALAPKTRLYALAKQVGVASKELVAQFAQMGIKKS
AQSSLTPEEVGQLIDALVPATETPEPAAAEGNQVVAEDADQPEGSAEDKPTKTVKKKRAK
RAVKRVSKAGKKAESKEQTEEPTPEESAAQPDGAGEFQEAAPAQDAEQAAQPEQLSEEEE
KLRERVRKNVDNEISQIVDKVDAEMLHEALAEAGDSDEEDDDLTPLITPMAEEDPDVYDF
APVFMAPKITPLSKRQKPEEREEESEEDTAPVSQPCGRRRGSRGTSRGRGAEGRGSAREE
VEHIEEPKAIKGSTRIEAQRRRRAELREKGRERQHIVSQAEFLARRESVERTMVVRDKQR
TDGAGIITQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNG
VLYAGDIDWRALGIGGRSRKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVY
VPGGRSAGISRKLPAPERKRLKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLW
EDISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDS
MAHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVID
VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRR
LKEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHEYPVDED
PEEENSKPQRRGRKERRAPQRDPKKHPAAVRMHRDDEDAAAEHETATEKETSRDDDSSLE
ELVANVVVVDEDEPETPDSASIGYAVAESLDAKRSKPKPKSKAKRSRKPRRATRTFREPQ
REETSEGSRAKHGKRDEHADAEKASPQRSEQTYEEAVEAFEKSPRRKRRTRGNSRSDIRP
KREDFAQDETSAKDAQLATSKKEAKAERKGAEPGENTSVRATRSRGRRRVVRKMAQSQST
PASNDREQGSEAQRRESSAQTTASKARKGGRGRRRVTRRRSR
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaagaagaaaacagaagaagcacgtagtgaatcgacgttggccgcagctgta
gcggggattgaccgcgaggcgctcgcccccaaaacccgcctctatgccctggctaaacag
gtgggcgtggcctccaaggaactggtggctcagttcgcacagatgggaattaagaagtct
gcgcagtcctcgctgaccccggaagaggtgggccagcttatcgacgccctcgtacccgcc
accgaaacccccgagccggccgcagccgagggcaaccaggtcgtggccgaggacgccgac
cagccggagggttcggcagaggacaagcccacgaagaccgtcaagaagaagcgcgcgaag
cgcgcggtcaaacgcgtgagcaaggcaggcaagaaggctgagtcgaaggagcagacagag
gaacccacaccggaagagtctgctgcgcaaccggacggcgcgggggagttccaggaagcc
gcgccggcacaggatgctgagcaggccgcgcaaccggagcagctgagcgaggaggaagag
aagctgcgcgagcgcgtgcgtaagaacgttgataacgagatttcgcagatcgtcgacaaa
gtcgatgccgaaatgctgcacgaggcgctcgccgaggccggtgatagcgacgaggaggac
gacgaccttaccccgctgatcaccccgatggcggaggaagacccagacgtgtacgacttt
gcgccagtcttcatggcgccgaagatcacgccgctgtccaagcgtcagaagccagaagag
cgcgaggaggaatccgaggaggatacagcgccggtaagccagccgtgcggtcgtcggcgc
ggcagccgcggcacctcccgtggccgcggagcagaaggccgtgggtccgcccgtgaggaa
gtcgagcacatcgaagaaccgaaggcgattaagggctcgacccgcatcgaggcacagcgc
cgtcgccgcgcggagctgcgggagaaaggccgggagcgccagcacattgtctcccaagcg
gagttcctggctcgccgcgaatccgtcgagcgcaccatggtggtgcgcgataaacaacgc
accgacggcgcgggcatcatcacgcaggtcggcgtgttggaggatgaccttttggtcgaa
cacttcgtcacgaccgaaacgcacccgtcccagataggcaatatctacttgggccgtgtg
cagaatgtcttgccttcgatggaggcggccttcgtggatatcggacagggccgaaacggt
gtgttgtacgcgggcgacatcgactggcgggccttggggattggtgggcgcagccgcaag
gtagaaaacgccttgaagtctggtgatcaggttctcgtccaggtggccaaggaccccatc
ggtcataagggcgcacgtttgaccacccagatctccctggccggtcgcttcctggtgtac
gttcccggcgggcgcagcgcgggaatctcccgcaagctgccggcaccggagcgcaagcgc
ctcaagggcattctggagcgcgtcatcccaggggatggcggcgccatcatccgcacggcc
gcggaaaacgtgtcggaggaggacattgcctccgacgtcaaccgcctgcactccctgtgg
gaggacatcagcgcccgcgccgcgcatgaaaaggcaacgaagggtgccaagccggttacc
ctatatgaagagccggatctgctcatcaaagtggtgcgcgacctctttaatgaggacttc
agcaccttggtggtggatggtaagcgttcctacaacacggtcagcgcctacgtggattcc
atggcgcatgacttggccgaccgcgtggtgcgctatgacgcgcgcgagcacgatggtgag
gatgcctttagcgcctaccgcatcgatgagcagctgcagaaggctctcggccgcaaggtc
tggctgccgtcggggggaacgctcgttattgaccggacggaggccatgacggtcattgac
gtcaacacgggcaagttcaccggctccggcggcaacctcgaggagacggtgacccgcaat
aacctcgaagcagccgaggagatcgtgcgccagatgcgcctgcgcgatatcggcggcatg
atcgtcgtggacttcatcgacatggtgctgccggaaaaccaggaccttgtgctgcgccgc
ctcaaggaagcgctgggacgcgaccggactcgtcaccaggtttctgaggtcacctcactg
ggcttggtgcagatgacgcgcaagcgcgtgggcaccggcctcatcgagactttctccacc
gagtgcgaggcctgccatggccggggcatcatcattcacgagtacccggttgatgaggac
cccgaggaggagaactcgaagccgcagcgccgcggccgtaaggaacgccgtgcaccgcag
cgcgatccgaagaagcacccggccgccgtccgtatgcaccgcgacgatgaggacgccgcc
gccgagcacgaaactgccacagaaaaggaaacttcgcgcgacgacgactcctccttggag
gagctcgtggccaacgtggtcgtcgtcgacgaggacgagccggagaccccggatagcgct
tccattggctatgccgtagcggaaagcctggacgcgaaacgctcgaagccgaagccgaag
tcgaaggcgaagcgctcgcgcaagccgcgccgggcaacgcgtaccttccgggagccacag
cgcgaagagacgagtgagggctcgcgcgcgaagcacggcaagcgcgatgagcacgccgat
gcggaaaaggcatccccgcagcgctcggagcagacctatgaagaggccgtcgaggctttt
gagaagtcaccgcgccgcaagcgccgcacgcgcggaaactcccgttcggatattcgcccg
aagcgtgaagacttcgcgcaggacgagacctcagcaaaggacgctcaactagccacctct
aagaaggaggccaaggctgagcgcaagggtgcggagccgggcgagaacacgagcgtgcgc
gcgacccgcagccgcggccgccgccgagtggtgcgcaagatggcacagagccagtccacc
ccggcgtcgaatgatcgcgaacaggggagcgaggcgcagcggcgagagtcttccgcacag
accacagcgtcgaaggcacgaaagggcgggcgcgggaggcgtcgtgtaacacggcgcagg
tcgcgctag
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integrated database retrieval system
