Coffea arabica (coffee): 113688227
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Entry
113688227 CDS
T11342
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1
KO
K13103
tuftelin-interacting protein 11
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113688227
Spliceosome [BR:
carb03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113688227
Other components
Complex C specific factors
113688227
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Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
113688227
NCBI-ProteinID:
XP_027061787
UniProt:
A0A6P6S8M9
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Position
5e:complement(50891966..50897681)
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AA seq
847 aa
AA seq
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MDEYQEMEKFGMENDFEDGQWIGGEFYYRKRREKRTQTKDDVLYGVFASGDSDSDDYGGL
GSSRKRRKDKGLSSKPDFSKPVNFVSTGTVMPNQEIDRNLEEEKLDDEGEVDRVPAGLGF
AASSSSSKETTMLMEDGSKNDDEDFLPSAFGKKIKEGAQLRREREKEKSMLAKKSSRLGR
KELEPGDVGSFEKHTKGIGLRLLEKMGYKGGGLGKNEQGIVAPIQAKLRPKNMGMGFNDY
KETNLPVLKELEEKIVTSSVQPAAVQLKEKLWSKQARIKKKVYVTAEELLAKKQEQSLEV
VQKVFDMRGPQVRVLTNLENLNAEEKARENDIPMPELQHNIKLIVDLAELDIQKVDRDLR
NERETVVSLQKEREKLQNQASKEKQELDSMGDILNILEQIGEQSSSGTLTLDSLAKLFVD
MQKRHREEYKLCNLSCIACSYAQPLFIRVFQGWDPLQNPTHGREMVSQWKSLLQEDTLNF
ANSSSPYTQLIMEVVFPAVRISGTNTWQARDPEPMLRFLDSWEKLLPTLVVQKILDEIVM
PKLSAAVDSWDPRRETIPIHSWVHPWLPLLGHRLEACYHTIRDRLESVLHAWHPSDMSAY
YILSPWKTVFDSASWEKLMVRHIIPKLLTVMHEFQINPANQNLDQFYWVRTWAATIPIHH
MIHIMDIFFNKWQEILYHWLCSSPNFEEVTNWYLGWKDLFPPELLANEHVRHRLSVGLDM
MNKAAEGMEVVQPGLRENISYLRVREQRQFEKAAAQAQERASQLQGSSGLELSLKEVIEV
HAQQNGLLFKPKPGRMQDGHQIYGFGNINIIIDSLNQKVFAQIDDRWSLASLEQLLELHS
RSGLKRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatatcaagaaatggagaagtttgggatggagaatgattttgaggatgggcaa
tggattggtggagagttttattatagaaaacgtagagaaaagcgcacacagacgaaagat
gatgtcttgtatggtgtttttgcttctggggatagtgattctgatgattatggaggttta
gggtcttcgagaaaaaggaggaaggataaggggctttcctcgaaacctgactttagtaag
cctgtcaattttgtgtctactggtactgttatgcccaatcaggaaattgatcgaaattta
gaggaggagaagctagatgatgagggtgaagttgatcgagtcccagctgggcttggtttt
gctgcgagttcttcttcatcaaaggaaacaactatgttgatggaggatggtagtaaaaat
gatgatgaggactttttaccaagtgcgtttgggaaaaagatcaaagaaggagctcaattg
agacgcgagagggaaaaggagaaatctatgttagctaagaagtcttctcgactggggagg
aaggaactcgagccaggcgatgtgggttcctttgagaagcacacgaagggtattgggttg
agattgttggagaagatgggttacaaaggaggggggttgggtaaaaatgagcaaggtatt
gtggcaccaattcaggctaaattgcgaccaaagaatatggggatgggttttaatgactac
aaagagactaatctgccagtgctgaaggaactagaagagaagattgtgacttcttctgtt
cagcctgctgcggttcagttgaaagagaagctctggtccaagcaagcccggattaagaag
aaggtttatgttacagctgaggagttgctggcgaagaagcaagagcagagccttgaagtt
gtgcagaaagttttcgacatgagggggcctcaggttcgtgtcttgaccaacttggaaaat
ctaaatgctgaagagaaagcaagagagaatgacataccaatgcctgagcttcagcacaat
attaaactgattgtggatttagctgaattagatatacagaaggtagatcgagacttaaga
aacgagagggagacagttgtaagtttgcagaaagagagggagaaactccaaaaccaagca
tctaaggagaagcaggagcttgatagcatgggagatatacttaacatattggagcagata
ggggagcagagctcttcgggaacactgaccctagattctttggctaagttgtttgtggac
atgcagaaacgacacagagaagaatataaactttgcaatttatcatgcattgcatgttca
tatgcccagcccttgtttatcagagtatttcagggttgggaccctcttcagaatccaaca
catgggagagaaatggtatcccaatggaagtcccttttgcaagaagacactttaaatttc
gctaacagttcatctccttacacacaactgattatggaagttgtgtttcctgctgttaga
atatctggcaccaatacttggcaggcaagagatcccgagccaatgcttcgatttctggat
tcttgggaaaaattgctgccaactcttgttgttcagaaaattctggacgaaattgtcatg
ccaaaattatcagctgctgtggactcttgggatccacgtcgagaaaccattcctatccat
tcttgggttcatccatggcttcctttattgggacacaggttagaggcctgctaccacaca
attcgtgatagattggaaagtgttttgcatgcttggcatcccagtgatatgtcagcatac
tacattctttcaccttggaagacagtgtttgattcagccagttgggaaaaactgatggtt
cgccatataattcccaaattgttgactgtcatgcatgagttccaaataaaccctgcaaac
cagaatcttgatcagttctattgggttcggacctgggcagcgactatccccatccatcac
atgattcacataatggatatttttttcaacaagtggcaagaaattttgtatcactggtta
tgttccagtccaaattttgaggaagtgacaaactggtacttaggctggaaggatctattc
ccacctgaacttttagctaatgagcacgttcgtcatagactgagtgttggccttgacatg
atgaacaaagctgctgaaggcatggaagtggttcaacctggtttgagagagaatatatcc
tatcttagggtgcgtgagcaaaggcagtttgagaaagctgctgctcaggctcaagaaaga
gcttctcagctgcaaggaagtagtggacttgagttgagcttgaaagaagttattgaagtg
catgcacagcagaatggtttgctcttcaagccaaaaccaggaagaatgcaagatggtcac
caaatatatggttttggtaacattaacattatcattgactccctcaatcagaaagtcttt
gctcagatagacgataggtggtctttggcatctttggagcagctcttggagttgcacagc
cgttctggtttaaagcggcgctaa
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