Coffea arabica (coffee): 113688248
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Entry
113688248 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X5
KO
K03504
DNA polymerase delta subunit 3
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03410
Base excision repair
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113688248
03410 Base excision repair
113688248
03420 Nucleotide excision repair
113688248
03430 Mismatch repair
113688248
03440 Homologous recombination
113688248
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
carb01009
]
113688248
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carb03032
]
113688248
03400 DNA repair and recombination proteins [BR:
carb03400
]
113688248
Protein phosphatases and associated proteins [BR:
carb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113688248
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
113688248
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
113688248
MMR (mismatch excision repair)
DNA polymerase delta complex
113688248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
113688248
NCBI-ProteinID:
XP_027061808
UniProt:
A0A6P6S6M9
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Position
5e:50709233..50713777
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AA seq
547 aa
AA seq
DB search
MFFAEGKLFIGFGSSLPLFGCEIRLPHADPNMAEIETLGILDEIQSLVSDKLQVVSYKWL
SRNFLVSSNDAKRLLQDFVEKRGTGVEVVYTLSGWLKTDPSVYHIRLVSKPKLTEVKQEF
DENCSVQIYSVQACLPKDPAVLWNAEFVQAEELFKQPHEVDNCLRDNRFCGVLNSFVKRN
AEEANGTTSVLPVKTTGTSGSSGYTLANQSPTIPQPQQKKVQGSSPNVTLQSPNVVKDVK
NESKPAENKLKVPQLAVNTKKVETDKNSSGTGGALANMWGRASAKSKAECASAKTNGISN
SAAIADAQICAREEIEHESSDDEGQGVNVKRSYNGEVGRKRRVVFDFSDEEDEFKDAVNL
ASPDPPKKKSMLDSKRSSYSSDIEKSKLNFEEEKEDKPNFKHRKETDRKSKEENLAFGNH
NNMNSSSSEKVINHVPAVDTIVKDKTRDAAPNSPKRKKVLKTRIDERGREVTEVVWEGEE
ETKPESDTTKKADNIPASNNSNRPSAVKKSPAVTANAPLNQVGKTGSKKAGNKDPKQGNI
LSFFKRV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgttctttgcggagggaaaattgtttatcggattcggttcatcacttccccttttcggg
tgcgagatccgactgccccacgctgacccgaacatggcagaaattgaaaccctgggtatc
ctcgacgagatacagtccctcgtctccgataagcttcaagtggtgtcatacaaatggctg
agtcgaaattttttggtgtcctcaaacgacgcaaaaaggctgcttcaggattttgttgag
aagcgtgggaccggagtagaggtagtttatactttgtctggctggttgaaaactgatcct
tccgtttatcatatcaggcttgtgtccaagcctaaacttacagaagtaaagcaagaattt
gatgagaattgctcagttcaaatctatagcgtgcaagcttgcttaccaaaagacccagca
gtcctttggaatgctgaatttgtccaagcagaagagctctttaagcagccccatgaagtt
gataattgtctgcgagataacagattttgtggagtactaaattcctttgtcaagagaaat
gctgaagaagcaaatggaaccacaagtgtgctaccagtgaaaactaccgggacctcaggg
tcatctggatacaccttggccaaccagagtccaacaattccacaaccgcagcagaaaaag
gttcagggatcaagccctaatgtcacattgcaatccccaaatgtggtcaaagatgttaaa
aatgagagtaagcctgctgagaacaaactgaaagttcctcaattggctgttaatacgaaa
aaagtagagactgataagaactcttctggaaccggaggtgcattggctaatatgtggggt
cgtgcatctgcaaagtccaaagctgagtgcgcctctgcaaaaactaatggcatatcaaat
tctgcagcaattgcagatgcacaaatatgtgctcgtgaagaaatagagcatgaaagcagt
gatgatgaaggtcaaggtgtcaacgtcaagcggtcgtacaatggcgaagttggtcggaag
aggagggttgtttttgacttctcagacgaagaagacgaattcaaagatgctgtcaatcta
gcatccccagatcctccaaagaagaaatcaatgctggattcaaaacgaagctcttattct
tcagacattgagaagagcaagttgaattttgaggaagagaaggaagataaaccaaatttc
aagcatagaaaagaaaccgacagaaaatcaaaggaagagaatctagcgttcggcaaccac
aacaacatgaactcttcttcttcggagaaggttataaaccatgtgcctgctgttgacaca
attgtgaaggataaaacaagggatgctgctccaaattcacctaaaaggaaaaaagtacta
aaaacaaggattgatgagcgtggaagagaagtaactgaggttgtttgggagggtgaggag
gagacaaagcctgagagtgacacaacaaagaaggctgacaacattccagccagcaacaat
tctaacagaccatctgctgttaagaagtcaccagctgtaactgctaatgctccattaaac
caagttggcaaaacgggaagtaagaaagcagggaacaaggatcctaaacaagggaatatt
ctgtcttttttcaagagggtttaa
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