Coffea arabica (coffee): 113689017
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Entry
113689017 CDS
T11342
Name
(RefSeq) protein argonaute 16 isoform X2
KO
K11593
eukaryotic translation initiation factor 2C
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113689017
03036 Chromosome and associated proteins [BR:
carb03036
]
113689017
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113689017
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113689017
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
113689017
microRNA pathway
RISC loading complex
113689017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
113689017
NCBI-ProteinID:
XP_027062650
UniProt:
A0A6P6S917
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All DBs
Position
5c:33356600..33365598
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AA seq
901 aa
AA seq
DB search
MEKDGNKCDSQPLPAPPPVIPPSVKPEKADRPNRSIISRPGFGKTGRPISLLTNHFRVSL
KHPDEIFYQYTVSISSELGKTVDSKGIGRKIMDKLYQIYFSDLAGKRFAYDGEKALYTVG
PLPHNNLEFPVVLEESMVKRGSPSQTGSPSESGKRAKHSLQSKTFKVAISYAAKVPLKSI
SLALQGTEPEKVQDALRVLDIVLRQQAANRGCLLVRQSFFHDDSRLFTEVGGGVTGCRGF
HSSFRPTHGGLSLNMDVSTTMILTPGPVINFLLANQNAKEPRFIDWVKAKKMLKNMRVKA
RHNNMEFKIIGLSEKPCNQQFFSMKVKSGTDQHDGGETVEVTVYEYFTKHRNIELHSSAY
MPCLDVGKPKRPNYLPLELCSLVSLQRYTKALTSMQRASLVEKSRQKPPERIQAVTNAMK
NYRYDDDPILSACGICIEKQLTQVDGRVLEAPKLKVGNNEDCFPCNGRWNFNKKKLVDPI
RIERWAVVNFSARCDTSYLSRELINCGRNKGIHIERPYSLIEEDPQNRRLSPAVRVEKMF
ELIMSKLPGPPEFLLCVLPERKNSDLYGPWKKRNLSDLGIVTQCLSPTKINDQYLTNVLL
KINSKLGGINSLLSIERPSRIPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRSWPL
ISRYRAAVRTQSSKVEMIESLYKPLANGEDGGIMRELLLDFYGTSNGYKPAQVIVFRDGV
SESQFSKVLNFELNQMIKAYEHLGEVNFPKFTVIVAQKNHHTKLFQNNASENVPPGTVVD
TKIVHPRNYDFYMCAQAGMIGTSRPAHYHVLLDEIGFSPDDLQQLILSLSYVYQRSTSAI
SIVAPVCYAHLAAQQMGQFIKFEDFSETSSGHKSGITSVGSISVPELPRLDEKVAGSMFF
C
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggacggtaacaagtgtgattctcaacctttgcctgcaccaccacctgtcata
ccaccaagtgtaaagcctgagaaagcagataggccaaaccgcagcataatcagtaggcca
ggatttgggaaaacagggcgacctatctctctgctcactaaccatttcagagtttctctc
aagcatccagatgagattttttaccaatataccgtttccattagttctgagctagggaaa
actgttgacagcaagggaattgggagaaaaattatggataaactttaccaaatctatttc
tctgatttagctggaaagagatttgcatatgatggagaaaaagctttatacactgtaggg
cctctgcctcataacaacttagagttcccagtagttctggaggagtccatggttaaacgg
gggagcccttctcagaccgggagtcctagtgagtctggtaaaagggcaaagcattctcta
caatcaaaaacctttaaagttgcgatcagttacgctgccaaagtacccttgaagtccatc
tctcttgctcttcaaggaactgaaccagaaaaggttcaagatgcactgagagttcttgac
attgtgctgagacaacaagctgctaataggggttgccttttggtcaggcagtcattcttt
catgatgattcgaggttatttactgaggttggaggtggtgttactggttgtcggggattt
cattcaagctttcggcccactcatggaggcttgtccttgaatatggatgtatctacaaca
atgatcctgacacctggccctgtaattaactttctacttgcaaaccaaaatgcaaaagaa
cctcgttttattgattgggtgaaggcaaagaagatgttgaaaaatatgagggtaaaggca
aggcacaacaacatggaattcaagatcataggtttaagtgaaaagccatgcaatcagcaa
tttttttctatgaaagtgaaaagtggtactgatcaacatgatggaggagagactgtagag
gtcacagtttatgagtattttacaaaacatcgaaacatagaacttcattcgtctgcatac
atgccatgccttgatgtcggaaagcctaaacgaccaaactatctgcctttggagttgtgt
tctcttgtatctctccaacgatacacaaaggctttaacctcaatgcagagggcatctcta
gttgaaaagtctaggcagaagcctccagagagaatacaagctgtaaccaatgctatgaaa
aactatcggtatgatgatgaccctatcctctctgcttgtggcatatgcattgagaaacag
cttactcaagttgatggccgtgtccttgaggcacctaagttgaaggttggtaacaatgaa
gattgcttcccatgtaatggccgttggaacttcaacaagaagaaacttgtagatcccatc
aggatagaacgttgggcagttgtcaacttctctgcccgttgtgacaccagttatctttcg
agggagcttatcaactgtggaagaaacaagggcattcatattgagcgaccatattcactg
atagaggaagacccacaaaatcgaaggttaagccctgcagtacgagttgagaagatgttt
gaactgattatgtccaaacttcctggtcctcctgaatttctgctgtgtgtgttgccagag
cggaaaaattctgatttatatggcccttggaagaaaaggaatctcagtgatcttggtatc
gttactcaatgcttgtcacctaccaagatcaatgaccaatatctcacaaatgtgcttctt
aaaatcaattccaagcttggagggatcaattcactgttgtcaatagagcgaccctcacgc
atcccacttatcaaggatactccaacaatgatcttggggatggatgtctctcatggatct
cctggccgctcagatattccatctattgctgctgttgttggatctagatcttggccactg
atatcaaggtacagagcagctgttcgtacgcaatcatcaaaggttgaaatgattgaatct
ctatacaaacctttggcaaatggagaagatggtggcattatgagggaactacttttggat
ttctatggtacaagtaatggctacaagccagctcaggttattgttttcagggatggagtg
agcgaatcacaatttagtaaggttttgaattttgagctcaatcaaatgataaaggcttat
gagcatcttggtgaggttaactttccgaaattcactgtgattgtggctcaaaagaatcac
cacacaaagctctttcaaaataatgcctcagaaaatgttccaccaggtactgttgtggac
acgaaaatagtccatccgagaaattatgatttttacatgtgtgctcaagcagggatgatt
ggaacttctcggcctgctcactatcatgtcttgcttgatgagattggtttctctcctgat
gacttacaacaactcatcctctctctctcatatgtgtaccaaaggagtacatctgcaatc
tcaattgtggctcctgtttgttatgcacatcttgcagcccaacaaatgggacagttcata
aagtttgaggatttttctgaaacttcttctgggcataagagtggcatcacatcagttggt
agcatttctgttcctgagcttcccaggctggatgaaaaggttgcaggctccatgttcttt
tgctga
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