Coffea arabica (coffee): 113689835
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Entry
113689835 CDS
T11342
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113689835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113689835
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113689835
Complex C
U5 SnRNP specific factors
113689835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113689835
NCBI-ProteinID:
XP_027063433
UniProt:
A0A6P6SB62
LinkDB
All DBs
Position
5c:complement(28416282..28428357)
Genome browser
AA seq
2374 aa
AA seq
DB search
MWGGNPQDMWGNSGNSDGNGGNMAAPPPPGIPPPLMPPGTSGGAGPTGPPPLPPPPSYTV
LPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRH
DKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ
WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAV
YTWFYDHKPLVKTKLINGPSYQKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFF
TAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRP
RKVKLGVYHTPMVMYIKTEDPDLPAFYYDPLIHPITSSNKDRREKKNYEEEEDDDFSLPE
GVEPLLKSTPIYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVK
VRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYN
MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANI
QFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVG
KGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFD
LELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRY
VKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVT
PEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQRE
ELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYL
DQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFE
KFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQ
YYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDAKVETRHPIRLYSRYIDKVHILFRFT
HEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLP
RSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQT
KERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLR
YSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSK
PSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGV
MIGIDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEP
YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKV
IHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILR
ALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSA
LTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSP
YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLR
TQIAGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQ
PNELPQLSPQDLTNHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRAN
KDTGSNPHGYLPTHYEKVQMLLSDRFFGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTP
REYYHEDHRPTHFLEFSNLEEGETAEGDREDTFT
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgtggggcggaaatccgcaagatatgtggggaaacagtggtaatagcgacggtaatggt
ggaaatatggctgcgccgcctcctccaggcatacctccaccgttaatgccaccggggact
agtggaggagctggacctactggtccgcctcctcttccacctccgccttcttatactgtt
ttgccgacggaggcacagctcgaggagaaagctcggaaatggatgcagcttaactcgaag
aggtatagcgacaagaggaagtttggttttgtcgaaacgcagaaggaggacatgccgcca
gagcatgtgaggaagattattagagatcatggtgacatgtcctcaaaaaaatatcgtcat
gataaacgtgtctatcttggagctcttaagtttgttccgcatgctgtgtacaagcttctt
gagaacatgccaatgccttgggaacaggtccgtgatgtgaaggtcttgtaccatataact
ggagctattacatttgtcaatgaaataccatgggtggttgagcccatttatctagcacag
tggggtacgatgtggataatgatgcggcgggagaagagagatcggcgacacttcaagagg
atgcgctttcctccattcgatgatgaggagcctcctcttgattacgccgataatctgttg
gatgtggacccattggagccaattcagttagagttagatgaggaagaagattctgctgtg
tatacttggttttatgatcataagcctcttgtaaaaactaagcttataaatggccctagt
tatcaaaaatggcatttgtcccttccaatcatggcaacacttcaccgtcttgctggacag
cttctctctgatctgattgatcgcaactatttctacctatttgatatggagtcatttttt
actgccaaagcactgaacatgtgcattcctggcggcccaaagtttgaacctttgtatcgg
gacatggaaaaaggagatgaagactggaatgagtttaatgatataaacaagcttatcatc
aggtcacctctaaggacagagtacagaattgcattccctcatctgtataacaacagaccc
cggaaggtgaagcttggagtgtatcacacccctatggttatgtacataaagacagaggat
cctgatcttcctgcattttactatgatcctctaattcaccccataactagctccaataag
gatagacgggagaagaagaattatgaagaggaggaggatgatgacttttctttgcctgaa
ggggttgaaccattgctcaaaagtactcccatatatactgatactactgctgcaggtata
tcacttctgtttgcaccacgaccttttaacatgagatcaggtcgtatgcgccgtgctgaa
gacatacctcttgtgtctgagtggtacaaggaacactgtcctccatcatatcctgtcaaa
gttcgtgtgagttatcagaagttgttgaaatgttttgtgttaaatgagctgcatcatagg
ccgcctaaggctcagaaaaagaagcacctgtttcgttctcttgcagccacaaagtttttc
caaaccacagaacttgattgggctgaagctggtctccaagtttgtaagcagggttacaat
atgttgaatctgttgattcacaggaaaaatctgaattaccttcatcttgactataatttc
aacttgaaacctgtgaagactctcacaacaaaggagcgcaagaagtctcgttttggtaat
gcttttcatctttgtcgtgaaatacttagactgacaaagcttgtagtggatgcaaatatc
cagttccggttaggaaatgtggatgcatttcagttggcagatggcttgcaatacatattt
tcacatgttgggcagttgacgggtatgtacagatataaatacaggctcatgcggcagata
cggatgtgcaaggatttgaaacacttgatttattaccgatttaatactgggcctgttggg
aaaggacctggatgtggtttctgggcacctatgtggagagtgtggttattcttccttcgt
ggaatagtgcctcttctggagcggtggttggggaacctactggcaagacaatttgaggga
cggcattctaaaggggttgctaaaactgttaccaaacagcgtgttgaaagccattttgac
ttggaacttcgtgctgctgtgatgcatgatgttcttgatgccatgccagagggcattaag
caaaataaggcaagaacgatcttgcagcatctgagtgaagcatggcgttgttggaaagcc
aatattccctggaaagtgcctggtctgcctgtgccaattgagaacatgattcttcgctat
gtcaagtcaaaagctgattggtggacaaatgttgctcattataatcgtgaacgtatacga
agaggtgcaactgtggacaaaacagtctgtcggaagaatcttggaagattgacccgtctt
tggttgaaagctgagcaggaacgtcagcataattatctaaaagatggtccatatgtgaca
ccggaagaagcagtggccatatacactaccactgtgcactggttggagtccagaaaattc
tcacctattccatttcctcccttgtcatacaagcatgatacaaaactacttatccttgcc
cttgaaaggttgaaagaatcttatagcgtggctgtcaggttaaatcaactacaaagagaa
gagttgggtctcattgaacaagcttatgataacccacatgaggccttgtcacggattaag
cgtcatcttctgacccaacgtgccttcaaagaagttggcatcgagttcatggatttatac
agttacttgatacctgtgtatgagattgaaccgcttgagaagatcacagatgcatatcta
gaccaatatctatggtatgaaggtgacaagcgccatctgtttcccaattggataaagcca
gcggattcagaacctccaccactattggtctataaatggtgtcagggtataaataacttg
caaggcatatgggatacaagtgaaggtcaatgtgttgtgatgcttcaaaccaaatttgag
aaattctttgaaaagattgatttgactatgctaaatagacttcttcgcttggttctggac
cataatattgctgattatgtcacggccaagaacaatgtcgtgctgtcttacaaggacatg
agtcataccaactcttatggtcttattcgtggtctgcaatttgcttcctttgtcgtacag
tactatggcttagtgctcgatcttttacttcttggtttaactagagccagtgaaatcgct
ggtccaccacagatgcctaatgagtttatcacttactgggacgctaaagtggagacacga
caccccataagattgtactcccgttacattgataaggtgcacatattgtttcggttcact
catgaagaggcacgggaccttatccaacggtaccttactgagcatcctgatcccaacaat
gagaatatggttggttataacaacaagaagtgctggccaagggatgcacgcatgaggctc
atgaaacatgatgtcaatcttgggagaagtgtgttttgggacatgaagaatcgtcttccc
agaagtatcaccacattggagtgggagaacagttttgtctctgtttacagcaaagataat
cccaacttgctttttagcatgtgcggtttcgaggttcgtatactgccaaagataaggatg
agtcaggaagcatttagcaatacaagagatggggtttggaacttgcagaatgagcagact
aaagagcgtactgcagttgctttcttacgtgttgatgatgagcacatgaaagttttcgag
aatcgtgtaaggcagatccttatgtcatcaggttctacaacattcaccaagattgtcaac
aaatggaatacagctttgataggtctgatgacatatttccgtgaagccactgtgcataca
caggaattgttagatttactggtcaaatgtgaaaataaaattcagacccgtattaagatt
gggttaaattcaaaaatgccaagcaggtttcctcctgtaatcttttacacaccaaaagaa
attgggggattagggatgttgtcaatgggtcacatattgattccacagagtgatctccga
tatagtcagcagacagatgtaggtgtaacacatttcaggagcggaatgagtcatgaagaa
gaccagttgattccaaatctttatcgttacatacagccttgggagagtgaattcattgat
tcgcaacgagtttgggctgaatatgctttaaagagacaagaggcgcaggcacagaataga
cgtttgactcttgaagatcttgaagattcatgggaccgtggaattcctcgaatcaacact
ttgtttcagaaagatagacacacccttgcatatgacaaaggatggagagtgagaacagat
tttaagcaatatcaagttctgaagcagaatccattctggtggacccaccagaggcatgat
ggaaagctatggaacttgaacaattataggactgacgttattcaagcacttggaggagtt
gaaggaattctggagcacactttatttaaaggaacttacttccctacttgggagggtctc
ttctgggaaaaggcatcaggttttgaagaatccatgaagtataagaagctgaccaatgca
caaagatctgggcttaatcaaattcctaatcgtagatttacactttggtggtcacctaca
ataaatcgagcaaatgtttatgttggtttccaagtgcagctggatttgacagggatattt
atgcatggaaagatcccaactttgaagatatctctaatacagattttccgtgcacacttg
tggcagaagattcatgaaagtgttgtgatggatctttgccaggtcttggatcaagaactt
gatgcattggaaattgagacagtgcagaaggaaacaatccatccaaggaaaagctataaa
atgaacagctcgtgtgctgacattcttttatttgcagcccataggtggcctatgtcaaag
cctagtcttgtggctgagtcaaaggatgtgtttgatcagaaggctagcaataaatattgg
atagatgttcaacttcgttggggtgattatgactctcatgacattgagaggtatacaagg
gcaaaatttatggattacacaacagataacatgtctatatatccttcacccactggggtt
atgattggaattgatcttgcttacaacctgcattctgcctttggtaactggttccctggc
tctaaaccgttgcttgctcaggccatgaacaaaatcatgaagtcaaatcctgctttatat
gttctgagggaacggataaggaaaggtttgcaattgtattcttcagagccaacagagcca
tacctgtcatctcaaaactatggtgaaatcttcagtaaccagataatctggtttgttgat
gacactaatgtctacagagtgaccatccacaagacatttgaaggcaatctcacgacgaaa
cccatcaatggtgccatcttcattttcaatccgaggacaggacagctatttcttaaggtt
attcacacgagtgtttgggctgggcaaaagcgtttagggcagctggccaagtggaagact
gctgaagaagtggctgccctggtgcgttctttaccggtggaagaacagccaaagcagata
attgtcactcggaagggaatgttggatcccttggaggttcacctactggattttcctaat
attgtcattaaaggaagtgagcttcagctgccattccaagcatgcttgaaaattgaaaaa
tttggtgatctgatcctgaaagccacagaaccacaaatggtcttgttcaacatctatgat
gattggcttaaaagtatttcttcgtacacggctttctccagattgatcttgatcttgcgc
gcacttcatgtaaacaatgaaaaggcaaagatgttactgaagccagacaagacaattgtt
actgaaccgcatcatatttggccctctcttacagatgatcagtggatgaaggttgaggtt
gcgttgagggatctcatcttgtcggattatgccaagaagaacaatgtgaacacttcagca
cttacacagtcagagatccgtgatataatccttggagctgaaattactcccccttctcag
cagcgacaacaaattgcagagatagaaaagcaggctaaggaagcaagtcaactgacagca
gtcaccacaagaaccacaaatgtacatggggatgaactgattgttacaactacaagccca
tatgagcaagctgcatttgggtctaaaactgactggcgtgttagagcaatttcggcgaca
aatctttatcttcgagtgaatcacatatatgttaattctgaggatataaaggaaactggc
tacacttacattatgcccaaaaacatcttgaagaagttcatctgcattgccgacttgcgg
actcaaattgcaggttatttgtatggcattagccctcctgacaatcctcaggtaaaggaa
attcgttgcattgccatgccaccacaatggggaactcatcagcaagtgcatctgccgtca
gctcttccagagcatgacttccttaatgatttggagcctttgggatggatgcatacccag
ccaaatgaacttcctcaattgtcacctcaggatctaacaaatcatgctcgaattttggag
aacaacaagcaatgggatggagagaagtgcattattctaacttgtagttttacacctggg
tcgtgctcattaactgcatataagctgacgccatctggctatgagtggggacgcgccaac
aaggatacaggaagtaatcctcatggttacttgccaacacactatgagaaggtccagatg
ctcctaagcgatcgtttctttggtttttacatgattccagataacggaccatggaattac
aacttcatgggcgtaaagcatactgtaagcatgaagtatggagtcaaactgggaacgcct
agggaatactatcatgaggatcatcggccaactcatttcttggagtttagcaatttggag
gagggtgagactgcagagggggaccgcgaggatacatttacttaa
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integrated database retrieval system
