Coffea arabica (coffee): 113690509
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Entry
113690509 CDS
T11342
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00900
Terpenoid backbone biosynthesis
carb01100
Metabolic pathways
carb01110
Biosynthesis of secondary metabolites
Module
carb_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
113690509
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
carb01006
]
113690509
Enzymes [BR:
carb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
113690509
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
113690509
2.5.1.29 geranylgeranyl diphosphate synthase
113690509
Prenyltransferases [BR:
carb01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
113690509
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
113690509
NCBI-ProteinID:
XP_027064238
UniProt:
A0A6P6SDH6
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Position
5c:complement(47896659..47898147)
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AA seq
305 aa
AA seq
DB search
MARALSSCNGRANLFGSSTSNLLSPASVCYRPLVVRMSREQPYSYWANIEADVETHLKEA
IPIRHPVSVFEPMHHLAFAAPRTTAPALCIAACELVGGDRSQAMAAASAVQLMHAAAYAH
EQLPLTDRTRPATERRFGPNIELLTGDGMVPFGFELLADSLDSAQNNPDRVLRVMAEIAR
ATGSQGLVDGQFREFIISQSDEEGAVDASSIEYVSRKKEGELHACAAACGAILGGGSEAE
IEKLRSYGLYAGTIQGMLHGIGRNQKGVREMVENLRALALKEVESFKKREIEAISSLVQP
ELSFV
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctagagctctttcaagttgcaatggaagggcgaatcttttcgggtcctccacatca
aatcttcttagcccagcgtcagtatgctacaggcctctggtggtcagaatgtcccgagag
caaccttactcttactgggcgaacatcgaagcggacgtcgaaacacatctaaaggaagcc
atcccaatccggcatccggtctcggtcttcgagcccatgcatcatctagcctttgctgcg
ccgagaaccacagcccccgccctgtgcattgctgcttgtgaactcgtcggcggcgacagg
agccaggccatggctgcggcgtctgctgttcagctcatgcatgcagccgcgtatgctcac
gagcagcttcccttgaccgacaggaccaggcccgcaacggaacgtaggttcggcccgaat
attgagctcctgaccggggacggaatggtgccatttgggttcgagctgctggctgattcg
ctggattcagcccaaaacaatccggatcgggtgttgagggtaatggccgaaatcgcccgg
gccacaggatcgcaggggttggtggatggccaattcagggaattcatcatcagccaatcg
gacgaggaaggggcggtcgatgcgagctcgattgagtatgtgagcaggaagaaagaaggt
gaactgcatgcttgtgctgcagcttgtggagccatattaggaggcggcagcgaggcagaa
atcgagaagttgagaagctatggactctatgccggaaccatacaaggaatgctacatggg
attggaagaaatcaaaagggagtgcgagaaatggtggaaaatttgagagcattggccctg
aaagaagtggagagtttcaagaagagagaaattgaggcaatttccagcttggttcagcct
gaactcagcttcgtctaa
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