Coffea arabica (coffee): 113690703
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Entry
113690703 CDS
T11342
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113690703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113690703
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113690703
Complex C
U5 SnRNP specific factors
113690703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113690703
NCBI-ProteinID:
XP_071906518
UniProt:
A0ABM4UGW2
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All DBs
Position
1e:complement(1309653..1321603)
Genome browser
AA seq
2378 aa
AA seq
DB search
MYTGNSRDLWGSDSGNDGTGGGNMAAPLPPGVPPPSMPPGTSGGAGPSGGVPPPVPPPAS
YTVLPSEAQLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKK
YRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVHDVKVLYHITGAITFVNEIPWVVEPIY
LAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEED
SAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDME
SFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPIRTEYRIAFPHLYN
NRPRKVKLGVYHTPMVMHIKTEDPDLPAFYYDPLIHPITSSNKDRWEKKNYEDEGDDDFS
LPEGVEPFLRSTPLYTDTTAAGISLLFAPQPFNMRSGRMRRAEDIPLVSEWYKEHCPPSY
PVKVRVSYQKLLKCFVLNQLHHRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQ
GYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVD
ANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTG
PVGKGPGCGFWAPMWRVWLFFLRGTVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVES
HFDLELRAAVMHDVLDAMPEGIKQNKSRTILQHLSEAWRCWKANIPWKVPGLPVPIENMI
LRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGP
YVTPEEAVAVYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQL
QREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITD
AYLDQYLWYEGDKRRLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQT
KLEKFYEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASF
VVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDTNVETRHPIRLYSRYIDKVHILF
RFTQEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKN
RLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMSQEAFSNTRDGVWNLQN
EQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAS
IHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQS
DLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWDSEFIDSQRVWAEYALKRQESQA
QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQ
RHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKL
TNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFR
AHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADIILFAAHRWP
MSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSP
TGVMIGIDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEP
TEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLF
LKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLD
FPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSVSSYTAFSRLIL
ILRALHVNNEKAKMLLKPDKTIVTEPHHVWPSLTDDQWMKVEVALRDLILSDYAKKNNVN
TSALTQSEIRDIILGAEITPPSQQRQQIAEVEKHAKEASQLTAVTTKTTNVHGDELIVTT
TSPYEQNPYISKTDWRVRAISATNLHLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIA
DLRTQIAGYLYGISPPDNPQVKEIRCIAMPPQWATHQQVHLPSALPEHDFLDDLEPLGWM
HTQPNELPQLSPQDLTNHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWG
RTKNKDTGSNPQGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTASMKYGVK
LGTPREYYHEDHRPTHFLEFSNLEEGETAEGDREDAFT
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgtatactggaaattcgcgagatttgtgggggagcgatagtggtaacgacggtactggt
ggtggcaatatggctgcgccactgcctccgggggtacctccgccgtcaatgccgccgggg
actagtggaggagcaggacctagtggtggtgttcctccacctgttccaccgcctgcttct
tatactgttctgccgtctgaggcgcagctcgaggagaaggctcgtaaatggatgcagctt
aattcgaagaggtatggtgacaagaggaagtttggatttgttgaaactcagaaggaagac
atgccgccggagcatgtgaggaaaattataagggatcatggtgatatgtcctcaaaaaaa
tatcgacatgataaacgtgtatacctaggagctctcaagtttgtacctcatgctgtctat
aaactccttgagaacatgccaatgccttgggaacaggtccatgatgtgaaggtcttatat
catataactggggctattacatttgtgaatgaaataccttgggttgttgagccgatttat
ctagcacagtggggtacaatgtggattatgatgcgaagggagaagagagatcggcggcat
ttcaagaggatgaggtttcctccttttgatgatgaggagcctccactagattatgctgac
aatctgttggatgtggatcctttggagccaattcagctggagttagatgaggaagaagat
tctgctgtatatacttggttttatgatcataagcctcttgtaaaaactaagcttataaat
ggccctagttaccgaaaatggcatttgtccctcccaatcatggcaacgcttcatcgtctt
gctgggcagctcctatcagatctcattgatcgcaattatttctacctgtttgatatggag
tcattttttactgccaaagcattgaacatgtgcatacctggtggccctaaatttgaacct
ttgtatcgggacatggaaaaaggagatgaagactggaatgagtttaatgacatcaacaag
cttatcataaggtcacctataaggacagagtacagaattgcattccctcatttgtataac
aacagaccccggaaggtgaagcttggagtgtatcacacccctatggtcatgcacataaag
acggaggatcctgatctgccggcattttactatgatcctctaattcaccccataaccagc
tccaataaagacaggtgggagaagaagaattatgaggatgagggggatgatgacttttca
ttacctgaaggggttgaaccatttctaagaagtactcccttgtatactgatactactgct
gctggtatatcacttctttttgctccacaaccttttaacatgagatctggtcgtatgcga
cgagctgaagatataccgcttgtatctgagtggtataaggaacactgtcctccatcatat
cctgtcaaagttcgtgtgagttatcagaagttgttgaagtgttttgtgttaaatcagctg
catcatagaccacctaaggctcagaaaaagaagcacctgtttcgttctcttgcagccaca
aaatttttccaaactacagaacttgattgggctgaagctgggctccaagtttgtaagcag
ggttacaatatgttaaatttgttgattcacaggaaaaatctgaattatcttcatctggac
tataatttcaacctgaaacctgtgaagactcttactacaaaggagcgcaagaaatctcgt
tttggaaatgcttttcatctttgtcgtgaaatacttcggttgacaaagcttgtagttgat
gcaaatatccagttccgcttgggaaatgtggatgcatttcagttggcagatggcttgcaa
tatattttttcgcatgttgggcagttgacaggcatgtacagatataaatacaggcttatg
cggcagatacgaatgtgcaaggatttgaaacacttgatttactaccgatttaatactggg
ccagttgggaaaggaccaggttgtggtttctgggcacctatgtggagagtgtggttgttt
ttccttcgtgggacagtccctcttctggagcggtggttgggaaacttattggcaagacaa
tttgagggacgacattctaaaggggttgctaaaactgttaccaagcagcgtgtcgaaagc
cattttgatttggagcttcgtgcagccgtaatgcatgatgttcttgatgctatgccagaa
ggcattaagcaaaataagtcaagaacgatcttgcagcatctaagtgaagcttggcgctgt
tggaaagccaatattccctggaaggtgcctggtctgcctgttccaattgagaacatgatt
ctccgctatgttaagtcaaaagctgattggtggacaaatgttgctcattataatcgtgaa
cgcatacgaagaggtgcaactgtagacaaaacagtctgtcgtaagaaccttggaagattg
acccgtctttggcttaaagcagaacaggaacgtcagcacaattatctaaaagatggccca
tatgtgacacctgaagaagctgtggccgtttacactaccactgtccactggttggagtcg
agaaaattctcacctattccattccctcccttgtcatacaagcatgatacgaagcttctt
atccttgcccttgaaaggttgaaagaatcttatagcgtggctgtgagattaaatcaacta
caaagagaagagttgggtctcattgaacaagcatacgataatccacacgaggctttgtca
cggattaaacgtcatcttctgacccagcgtgccttcaaagaagttggtattgagttcatg
gatttatacagctatttgataccggtttatgagattgaaccccttgagaagataacagat
gcatatcttgaccaatatctctggtatgaaggcgacaagcgccgcttgtttccaaattgg
ataaagccagctgattcagagccacccccattgttggtctataaatggtgtcagggcata
aataacttgcaaggcatttgggatacaagtgaaggtcaatgtgttgtgatgcttcaaacc
aaattggagaaattctatgaaaaaattgatttgaccatgctaaataggctactaaggttg
gttcttgatcacaatattgctgattatgtcacggccaagaacaatgttgtgctgtcctat
aaggatatgagccataccaactcctatggccttattcgtggtctgcaatttgcttctttt
gttgtacagtactatggactagtgctggatcttttgcttcttggtttgactcgagccagt
gaaattgctggtcctccacagatgccgaatgagttcataacttactgggacactaacgtg
gagacacgacaccccataagattgtactcccgttacattgataaggtgcacatattgttt
cgatttactcaggaggaggcacgggaccttatccagcggtaccttactgagcatcctgat
cccaataatgagaatatagtgggttataacaacaagaagtgctggccaagagatgcacgc
atgaggcttatgaagcatgatgtcaatcttgggagaagtgtgttctgggacatgaagaat
cgtcttcctagaagcattaccacattagaatgggagaacagctttgtctctgtttatagc
aaagataatcccaacttgcttttcagcatgtgtggttttgaggttcgtatactgccaaag
ataaggatgagtcaagaagctttcagcaatactcgagatggggtttggaacttgcagaat
gagcagactaaagagcgtactgctgttgctttcttacgtgttgatgatgagcacatgaag
gtttttgaaaatcgtgtgaggcagattcttatgtcatcgggttctacaacgttcaccaaa
attgtcaacaaatggaatacagctttgataggtctaatgacatatttccgggaagcaagt
attcatacacaggaattgctggatttactggttaaatgtgaaaataaaattcagacccgt
attaagattggtttaaattcaaaaatgccaagcaggtttcctcctgttattttttataca
ccgaaggaaattgggggactggggatgttgtcaatgggtcacatattgattccacagagt
gatctccgatacagtcagcagacagatgtaggtgtgacacatttcaggagtggaatgagt
catgaagaagaccagttgattcccaatctttatcgctatatacagccatgggacagtgaa
ttcatagattcacagcgagtttgggctgaatatgcgttaaagagacaagagtctcaggca
cagaacaggcgtttgactcttgaagatctggaagattcatgggaccgtggaattcctcga
atcaacactttattccagaaagatagacacacccttgcatatgacaagggatggagagtg
agaacagattttaagcaatatcaagttctgaaacagaacccgttttggtggacgcaccag
aggcatgatggtaagctatggaacttgaacaattacagaactgatgttattcaggcacta
ggaggagttgaaggaattctggagcacacattgttcaaagggacatacttccctacttgg
gagggtctcttctgggaaaaggcatcaggttttgaggaatccatgaagtataagaagcta
acgaatgcacagagatctgggctcaaccaaatccctaaccgcagatttacgctttggtgg
tcacccacaataaatcgagcaaatgtttatgttggtttccaagtgcagctggatttgaca
gggatatttatgcatggaaagatcccaactttgaagatatctctaatacagatatttcgt
gctcacttgtggcagaagattcatgaaagcgttgtgatggatctttgccaggtcttagat
caagaacttgatgcattggaaattgagactgtgcagaaggaaactatccatccaagaaaa
agctacaaaatgaacagctcttgtgctgacattattctttttgcggcccatagatggcct
atgtcaaagcctagtcttgtggccgagtctaaggatgtttttgatcagaaggctagcaat
aaatattggatagacgttcagcttcgttggggtgattatgactctcatgacattgagcgg
tacactagggcaaaatttatggattacacaacagacaacatgtctatatatccttcacca
actggggtaatgattgggattgatcttgcttacaacttgcattccgcatttggtaactgg
ttccctggctctaaaccgttgctcgctcaggccatgaataaaatcatgaagtcaaatcct
gctttatatgttttgagggaacgaataaggaagggcttacaactgtattcttcagagcca
acagagccatacctgtcatctcaaaattacggtgaaatcttcagtaaccagataatctgg
ttcgttgatgacactaatgtctacagggtgacaattcacaagacctttgaaggcaatcta
actacaaaacccatcaatggtgccatcttcattttcaatccgaggacagggcagctattt
ctcaaggttattcacactagtgtttgggctgggcaaaagcgcttaggccagctggccaag
tggaagactgccgaagaagtagcggcccttgtacgttctttacctgttgaagaacagcca
aagcagatcattgtcactcgtaagggaatgttggatcccttggaggttcacctgctggac
tttccaaatattgtcattaaaggaagtgagcttcaactaccattccaagcatgcttgaaa
attgagaaatttggtgatctgatactgaaagctacagaaccacaaatggttttgtttaac
atctacgatgattggctcaaaagtgtttcatcatatacggctttctccagattgattcta
atcttgcgtgcactccatgtgaacaatgagaaggcaaagatgttactgaagcctgacaag
acaattgtcactgaaccacatcacgtttggccctctcttacagatgatcagtggatgaag
gttgaggttgctttgagagatcttatattgtcagattatgccaaaaagaacaacgtgaac
acttcagcacttacacaatctgagattcgtgatataatccttggagctgaaattactcca
ccttctcagcagcgacaacaaattgctgaggtcgaaaagcatgctaaggaagcaagtcag
ctgacagcagtcaccacaaaaaccaccaatgtccatggggatgaactgattgtcacgact
acaagcccatacgagcaaaatccatatatttctaaaactgactggcgtgttagagcaatt
tcagcgacaaatcttcatctccgagtcaatcatatatatgtaaattctgaggatataaag
gaaactggctacacttacattatgcccaaaaacatattgaagaagttcatctgcattgca
gatttgcggactcaaattgcaggctatttgtatggcattagccctccagataatcctcag
gtgaaggaaattcgttgtattgccatgccaccacaatgggcaactcatcagcaagtgcat
ctgccatcagctcttccagagcatgacttcctcgacgatttggagcctttgggatggatg
catacacagccaaatgaacttcctcaattgtctcctcaggatctgacaaatcatgctcga
attctggagaacaacaagcaatgggatggagagaagtgcattatactaacttgcagtttt
acacccggttcctgctcattaactgcatataagttgacgccatcaggttatgaatgggga
cgcacaaaaaacaaagatacaggaagtaatcctcaaggttacttgcccacacactatgag
aaggtgcagatgctcctaagtgatcgcttccttggtttctacatgatcccagataatgga
ccatggaattacaatttcatgggagtaaagcatactgcgagcatgaagtatggagtgaag
ctgggaacaccgagggagtactatcatgaggatcatcggcccacccatttcttggagttc
agcaacttggaggagggtgagactgcagaaggtgaccgcgaggacgcattcacttga
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integrated database retrieval system
