Coffea arabica (coffee): 113690756
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Entry
113690756 CDS
T11342
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1
KO
K13103
tuftelin-interacting protein 11
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113690756
Spliceosome [BR:
carb03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113690756
Other components
Complex C specific factors
113690756
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
113690756
NCBI-ProteinID:
XP_027064582
UniProt:
A0A6P6SGF3
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Position
5c:complement(45959213..45962381)
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AA seq
847 aa
AA seq
DB search
MDEYQEMEKFGMENDFEDGQWIGGEFYYRKRREKHTQTKDDVLYGVFASGDSDSDDYGGL
GSSRKRRKDKGLSSKPDFSKPVNFVSTGTVMPNQEIDRNLEEEKLDDEGEADRVPAGLGF
GASSSSSKETTMLMEDGSKNDDDDFLPSAFGKKIKEGAQLRREREKEKSMLAKKSSRPGR
KELEPGDVGSFEKHTKGIGLRLLEKMGYKGGGLGKNEQGIVSPIQAKLRPKNMGMGFNDY
KETNLPVLKELEEKVVTSSVQPGVVQLKEKLWSKQARIKKKVYVTAEELLAKKQEQSLEV
VQKVFDMRGPQVRVLTNLENLNAEEKARENDIPMPELQHNIKLIVDLAELDIQKIDRDLR
NERETVVSLQKEREKLQNQASKEKQELDNMGDILNILEQIGEQSSSGTLTLDSLAKLFVD
MQKRHGEEYKLCNLSCIACSYAQPLFIRVFQGWDPLQNPTHGREMVSQWKSLLQEDSLNF
ANSSSPYTQLIMEVVFPAVRISGTNTWQARDPEPMLRFLDSWEKLLPTLVVQKILDEIVM
PKLSAAVDSWDPRRETIPIHSWVHPWLPLLGHRLEACYHTIRDRLESVLHAWHPSDMSAY
YILSPWKTVFDSASWEKLMVRHIIPKLLTVMHEFQINPANQNLDQFYWVRTWAATIPIHH
MIHIMDIFFNKWQEVLYHWLCSSPNFEEVTNWYLGWKDLFPPELLANEHVRHRLSVGLDM
MNKAAEGMEVVQPGLRENISYLRVREQRQFEKAAAQAQERASQLQGSIGLELSLKEVIEV
HAQQNGLLFKPKPGRMQDGHQIYGFGNINIIIDSLNQKVFAQIDDGWSLASLEQLLELHS
RSGLKRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatatcaagaaatggagaagtttggcatggagaatgatttcgaggatgggcaa
tggattggtggagagttttattatagaaaacgtagagaaaagcacacgcagacgaaagat
gatgtcttgtatggtgtttttgcttctggggatagtgattctgatgattatgggggttta
gggtcttcgaggaaaaggaggaaggataaggggctttcctcgaaacctgactttagtaag
cctgtcaattttgtgtctactggtactgttatgcccaatcaggaaattgatcgaaattta
gaggaggagaagctagatgatgagggggaagctgatcgagtcccagctgggcttggtttt
ggtgcgagttcttcttcatcaaaggaaacaactatgttgatggaggatggtagtaaaaat
gatgatgacgactttttaccaagtgcttttgggaaaaagatcaaagaaggagctcaattg
agacgcgagagggaaaaggagaaatcgatgttagctaagaagtcttctcgaccggggagg
aaggaactcgagccaggcgatgtgggttcctttgagaagcacacgaagggtattgggttg
agattgttggagaagatgggttacaaaggaggggggttgggtaaaaatgagcaaggtatt
gtgtctccaattcaggctaaattgcgaccaaagaatatggggatgggttttaatgactac
aaagagactaatctgccagtgctgaaggaactagaagagaaggttgtgacttcttctgtt
cagcctggtgtggttcagttgaaagagaagctctggtccaagcaagcacggattaagaag
aaggtttatgttacagctgaggagttgttggcgaagaagcaagagcagagccttgaagtt
gtgcagaaagttttcgacatgagggggcctcaggttcgtgtcttgaccaacttggaaaat
ctaaatgctgaagagaaagcaagagagaatgacataccaatgcctgagcttcagcacaat
attaaactgattgtggatttagctgaattagatatacagaagatagatcgagacttaaga
aacgagcgggagacagttgtaagtttgcagaaagagagggagaaactccaaaaccaagca
tctaaggagaagcaggagcttgataacatgggagatatacttaacatattggagcagata
ggggagcagagctcttcgggaacactgaccctagattctttggctaagttgtttgtggac
atgcagaaacgacacggagaagaatataaactttgcaatttatcatgcattgcatgttca
tatgcccagcccttgtttatcagagtatttcagggttgggaccctcttcagaatccaaca
catgggagagaaatggtatcccaatggaagtcccttttgcaagaagactctttaaatttc
gctaacagttcatctccttacacacaactgattatggaagttgtgtttcctgctgttaga
atatctggcaccaatacttggcaggcaagagatcccgagccaatgcttcgatttctggat
tcttgggaaaaattgctgccaactcttgttgttcagaaaattctggacgaaattgtcatg
ccaaaattatcagctgctgtggactcttgggatccacgtcgagaaaccattcctatccat
tcttgggttcatccatggcttcctttattgggacacaggttagaggcctgctaccacaca
attcgtgatagattggaaagtgttttgcatgcttggcatcccagtgatatgtcagcatac
tacattctttcaccttggaagacagtgtttgattcagccagttgggaaaaactgatggtt
cgccatataattcccaaattgttgactgtcatgcatgagttccaaataaaccctgcaaac
cagaatcttgatcagttctattgggttcggacctgggcagcgactatccccatccatcac
atgattcacataatggatatttttttcaacaagtggcaagaagttttgtatcactggtta
tgttccagtccaaattttgaggaagtgacaaactggtacttaggctggaaggatctattc
ccacctgaacttttagctaatgagcacgttcgtcatagactgagtgttggccttgacatg
atgaacaaagctgctgaaggcatggaagtggttcaacctggtttgagagagaatatatcc
tatcttagggtgcgtgagcaaaggcagtttgagaaagctgctgctcaggctcaagaaaga
gcttctcagctgcaaggaagtattggacttgagttgagtttgaaagaagttattgaagtg
catgcacagcagaatggtttgctcttcaagccaaaaccaggaagaatgcaagatggtcac
caaatatatggttttggtaacattaacattatcattgactccctcaatcagaaagtcttt
gctcagatagatgatgggtggtctttggcatctttggagcagctcttggagttgcacagc
cgttctggtttaaagcggcgctaa
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