Coffea arabica (coffee): 113691046
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Entry
113691046 CDS
T11342
Name
(RefSeq) uncharacterized protein
KO
K06100
symplekin
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113691046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113691046
03019 Messenger RNA biogenesis [BR:
carb03019
]
113691046
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113691046
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113691046
U7-dependent histone pre-mRNA processing factors
113691046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
113691046
NCBI-ProteinID:
XP_027065027
UniProt:
A0A6P6SHL7
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All DBs
Position
1e:8702520..8705504
Genome browser
AA seq
984 aa
AA seq
DB search
MYSNELDTSLESSWSWMLKFRDEICSLAFKPGSDGRRLLALKFMETVVLLYTPDPNGSSD
PPADLDSEASVKEFNISWLRGGHPILNIGDLSIEASQSLGLLLDQLRFPTVKSLNNLIII
MLINSLSAIASKRPAFYGRILPVLLGLDPSSSSGKGVHHALKSAFLSCLNCTHPGAVPWR
DRLIDALRELKAVGVAEHAAIELASQNSGSLERKNDSLITQDRKPTSKALDDIRNDASRK
RTGMEESTDLLEDKMSVKRMKSVPVTSDGSTNDLSSDQGRVPSGGSGACKMEEDSGPVQQ
LVGMFGALVAQGEKAIASLEILISSISADLLAEVVIANMRNFPSNLPQIEGDNEQLFGRG
SCPGMSGSNSEFDNLTLLLTNILSQSSAVPQKDSGMDSLPSAANELELRGTSGNTDVPGM
SYVMEEASVPTTTPASSGGHAPCDTENGSGTPSDVIDVGNEESEIPGLDLPVPKDELVIT
SLGSTELKDASQEQVSSLARSSLELLPSVSTDRSEELSPRATVTDLSCVNSLSATSSGLS
TQLLLPKISAPVISLSDDQLDNLQKPILLRITDTYKQIATAGGSQVCLSVLAYLGVKFPL
DLEPWKLLQTHILSDYVNHEGHELTLRVLYRLYGEAEEDHDFVSSTTAKSVYEMFLLTVA
ETLRDSFPWPDKCLNRLLVEVPYLPDSILKLLEGMCSPGGSNKDNNNLERVRQGLSIVWS
LILLRPPIRDACLTIALKSAIHPVEEVRDKALRLVVNKLYPLPSMSRQIEAFAWEVLVSA
ANANTALESCDADGANAEFKDSDMGKPSNELPVVGTSSKGLSAVTDSFSISENISSSLLA
EGQRRMALYFAICTKNHSLFRQIFVIYESTSKAVKQAVLHHIPKLVRAIGPSPELLQILS
DPPTGSMKLVMQVLHTLIDGTTPSPELLSTIKKLYDTKVKDVEILILILPFLPKDEVLAM
FPHLVNSPVQSPTVAPHFLNVCGV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaaacgagttggatacttctctggaatcatcttggtcatggatgctaaagttt
cgcgatgagatatgctcgttggcatttaagccaggaagtgatgggagaaggttgcttgca
ctgaagtttatggaaacagttgttctactctatacacctgatcctaatggctcctcagat
ccacctgctgatctagattcagaagccagtgttaaagaatttaacatatcatggcttcga
gggggtcatcctatactaaatattggagatttgtcaattgaagcaagtcagagtttgggt
ctgctgctcgatcagttgagatttccaacagtaaagtcactgaacaacttgattatcatt
atgcttatcaacagtctctctgcaattgcaagtaaaaggcctgcattttatggacgtatt
ctgccagttttacttggtttggacccttcaagctccagtggcaaaggggtgcatcatgct
ttgaagagtgccttcctctcttgcttgaattgtactcatccgggtgctgtcccgtggcgt
gatcgcttaattgatgctctgagagaattaaaagctgtaggagtggcagaacatgctgct
atagaactagcttcacaaaatagtggaagtttagagaggaaaaatgattctttaataacc
caggatcgaaaacctacaagcaaggcccttgatgatatacgcaatgacgccagcaggaaa
agaacaggaatggaagaaagtactgatctacttgaggataaaatgtctgtaaaacgcatg
aaatctgtgcctgtcacctctgatggatcaacaaatgatttaagttctgaccagggcaga
gttccttctggtggatctggggcttgtaaaatggaagaagacagtggccctgtccaacaa
cttgttggtatgtttggtgcattggttgctcaaggagaaaaagctattgcatcattagag
attctcatctctagtatatcagctgacttgcttgctgaagttgtaattgctaacatgcgg
aattttccttcaaatctccctcaaattgaaggagataatgagcagttgtttggcagaggg
tcttgtcctggcatgtcaggaagcaattctgagtttgataatttaacattgcttctcacc
aacattctttcacaatctagtgctgtcccacagaaagatagtgggatggattctctacct
tctgcggcaaatgagcttgagctaagagggacctcgggtaatactgatgtccctggtatg
agctatgtgatggaagaggcttcagtgcctacaactactccagcttcttcaggtggacat
gccccatgtgacacagagaatggttcagggacgccctctgatgttattgatgttgggaat
gaagagagtgagatacctggtctagatttaccagttcccaaggatgaattagttattact
tctttgggttcaactgaattgaaggatgcaagtcaagaacaagttagtagtctagctagg
tcatcactagaattacttccttcagtgtcaactgataggtctgaggaacttagccctaga
gctacagttacagacctaagctgtgtcaactccttaagtgcaacttcttctgggttatcg
acacagttgcttttgcccaagatttctgccccggttataagtcttagtgatgaccagcta
gataacttacagaagccgattctcttgcgcataactgatacttacaagcaaatagctacc
gctggaggttctcaagtctgcctttctgtccttgcttatttaggagttaagtttccattg
gatttagagccatggaagttactacaaacacatatactgtctgactatgtaaatcatgag
gggcacgagttgactttgcgtgtcctctacaggttatatggtgaagcagaagaggaccac
gactttgtttcctcaaccactgctaaatctgtatatgagatgtttcttcttaccgtggca
gaaacattaagggattcttttccatggcctgacaaatgtctaaatagattgcttgttgaa
gttccttacctgcccgattccattttgaaattgcttgagggcatgtgttcccctggtggc
agtaacaaagataacaacaatctggaacgagttcggcaaggtcttagtattgtatggagt
ctgattttgttgaggcctcctattcgagatgcctgcctaacaattgctttgaagagtgca
attcatccggttgaagaagtgcgagataaggccttacgtctggtggtgaacaagctttat
cctctgccttcaatgtcacggcaaatagaagcttttgcctgggaggtgttggtatcagct
gcaaatgccaatactgcactggagtcatgtgatgctgatggagctaatgctgaatttaag
gattctgatatgggaaaaccatcaaatgaacttcccgttgttggtacctcttccaaaggg
ttatcagcagtcaccgattcattttcaatatctgaaaatatatcgtcctccttactagct
gaggggcagcgacgcatggctctgtattttgcaatttgtacaaagaatcactccctcttt
cgccaaatatttgttatttatgagagtacatccaaggctgtaaagcaggcagtattacac
cacatcccaaagcttgttcgagcaattggcccgtcgcctgagcttcttcaaatcttatct
gatccaccaactggaagcatgaagcttgtgatgcaggttttacacacattgatagatggg
acaacgccttccccggaattgttatctaccattaagaagttgtatgatactaaagtaaag
gatgtagagattctaattctcatactgccatttttgccaaaagatgaggttttggcaatg
tttccacatctcgtgaattccccagtgcagtcgccaactgtcgcgccccactttttgaat
gtgtgtggtgtgtga
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