Coffea arabica (coffee): 113691446
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Entry
113691446 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113691446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113691446
03041 Spliceosome [BR:
carb03041
]
113691446
03036 Chromosome and associated proteins [BR:
carb03036
]
113691446
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113691446
Spliceosome [BR:
carb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113691446
Complex B
113691446
Complex C
U2 SnRNP specific factors
113691446
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
113691446
TFTC complex
113691446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
113691446
NCBI-ProteinID:
XP_027065380
UniProt:
A0A6P6SGW9
LinkDB
All DBs
Position
6c:63504355..63517314
Genome browser
AA seq
1399 aa
AA seq
DB search
MAVTEEESSSPSSSSSSSSWPGANSKLRSSASHHSYYLAKSVLRSSVVLQLVRGHIRSPF
SNDVVLGKETSVELVIIDDDGALQSVCEQPVFGTIKDLAILPWNERFHHSQNPQIRGKDV
LVVISDSGKLSFLSFSSEMHRFFPLTHVQLSSPGNGRDQIGRMLAVDSNGCFIAASAYED
KLALFSVSFSSGSDVIDKKIFLPPENQCNDKGFPSVCGTIWSMCFISKDLRQQSKERSPL
LAVILNRRMSYYRNELLLLEWNLREQAVHVIFRYDEAGPLAHHVVEVPNSYGLAFLFRAG
DALLMDFRDAHNPSVIFRTSLDFIPASVEEQNFAEDTATIRIPDIIDEEGMYSVAASALL
ELSDMRKSDSMDIDADTSIKPGSNYICSWSWEPGNVDNPRMIFSADSGDLFMIEISSDSH
GLKVNLSDSLYKSLPSKALLWVEGGFLAAIVEMGDGMVLKLEDGGLYYRSPIQNIAPILD
MSVVDYHGEKHDQMFACCGMAPEGSLRIIRSGISVDKLLKTAPIYHGITGTWALKMKVTD
TCHSFLVLSFVEETRVLSVGVSFSDVTDSVGFQPDVCTLACGLVADGLLVQIHQNAVRLC
VPINVAQSEGVPMSSPSCSSWGPDNMSISLGAVGHNVIAVATSSPCVLFILGIRSLSTYC
YEIIQMQQVRLQNELSCISIPSRHLEHRSLPSQMNFRNTSPAVGLPSGVDINNAIIIGTH
KPSVEVLSFSPDTGLQILAIGTISLTNTMGTIISGCVPQDVRLVLVDRLYILSGLRNGML
LRFEWPPDSAISPSDYTVMGSCLVNSLGSAMFTPPSNRGSLRSFSSFLEKTRDSFPVHLQ
LIAVRRIGITPAFLVPLSDYLDADIIALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCS
GECPRGILFVAENSLHLVEMVSSKRLNVQKFHLGGTPRKVLYHSESRLLLVLRTELQNDS
YSSDVCCVDPLSGSLLSSFKFEPGETGKCMELVKVGHEHVLVVGTSLSAGPAIMPSGEAE
STSGRLIVLCLEHTQNSDTGSATFSSRTFSYSQRSSPFHEIGGCSAEQLSSGSICSSPDD
DSSDGIKLEESEAWHLRLTYSTIWPGMVLAVCPYLDRYFLASAGNSFYVCSFPNDNLQRV
RRLAVGRTRFVIMTLTAHFTRIAVGDCRDGILFYSYHEDARKLEQVYCDPVQRLVADCIL
MDVDTAFVSDRKGSIAVLSSSDHLEDNASPECNLTLNCSYYMGEIAMSIRKGSFSYKLPA
DDVLRGYAVANTISDLSHNSIMASTLLGGVVIFIPVTRREYELLEAVQARLVIHPLTAPI
LGNDHNDFRGRESSVGTRKILDGDMLAQFLELTSMQQEAVLALPLSSPNKVMLSTKQSPP
RITVNQVVRLLERVHYALN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggcggttacggaggaagaatcgtcatcgccgtcttcctcgtcgtcgtcgtcgtcctgg
cctggagccaactctaaattacgctcctctgcctctcaccactcctattatctcgccaag
tctgtgctccgtagcagcgttgttcttcagcttgtccgcggccacatccgctcccctttc
tccaacgacgtcgtcctcggcaaggaaacatctgtagagctggtaattattgatgacgat
ggagcattgcaatctgtttgtgagcagcctgtttttggcacaataaaagatcttgctatc
ctcccttggaatgagaggtttcaccattcgcaaaaccctcagattcgggggaaagacgtt
ctggttgtaatttctgattcagggaagctttcctttctcagttttagcagtgaaatgcac
aggtttttccccttaacgcacgtgcaactttcgtccccaggaaatggaagggatcaaatt
ggaaggatgttggctgttgattccaatggttgtttcattgctgcaagtgcatatgaggac
aaattggctcttttttcagtgtcattttcttctggcagtgatgtcatcgataagaaaatc
tttttgccccctgaaaatcaatgcaatgacaaaggttttccaagtgtttgtggtactata
tggagcatgtgctttatctcaaaagatcttcgtcaacaaagtaaggagcgcagccctcta
ttagcagttattctgaataggaggatgtcatattatcggaatgaacttcttctattagag
tggaatctcagggaacaggctgtccatgtaatattccgttatgatgaagctggacctcta
gcacatcacgtagttgaagttcctaattcttatggattagcttttctgttcagggctggc
gatgcactattaatggattttagggatgctcacaacccttctgtaatttttagaactagc
ttggattttataccggcttcagtggaagagcagaattttgcggaagatactgctacaatt
agaattcccgatattattgatgaagaaggaatgtacagtgttgcagcctctgcattgctg
gagctgagtgacatgcgtaagagtgattcaatggatattgatgctgacactagcataaag
ccaggttctaactatatttgctcctggagctgggagccagggaatgtggacaatccgagg
atgattttcagtgcagactctggagatctttttatgattgaaatttcttctgattctcat
ggcctgaaagtaaatctatctgatagtctttacaaaagtttaccttcaaaggcattattg
tgggttgagggtgggtttttggctgcaattgttgagatgggtgatggaatggttttaaag
ctggaagatggagggctatattacagaagcccaattcaaaatattgcaccaattttggac
atgtcagttgttgattatcatggtgagaaacatgaccaaatgtttgcctgttgtgggatg
gcaccagagggttcattgcggattatcagaagtggtatcagtgtggacaaattgttgaaa
actgcccctatttatcatggtataactggcacttgggcacttaaaatgaaagttactgat
acgtgtcattctttcctagtgctatcatttgttgaggagaccagggtgctttctgttggt
gtaagcttttctgatgtgacagattcagttggtttccaaccagatgtctgcacactggca
tgtggtctggtggctgatggtttgctggtgcaaatccaccaaaatgcggtcagactctgc
gtgcctattaatgtagcccaatctgaaggtgttcccatgtcttctccaagttgttcgtcg
tggggtcctgataatatgagcataagcttaggagcagttgggcataatgtgatagctgtg
gcaacctctagtccctgtgtcttgtttattcttggtatcaggtccttatcaacttattgt
tatgaaataatccaaatgcaacaagtgaggctgcagaatgagttgtcctgcatctcaata
ccttcaagacatctagagcacagatcattaccatcccaaatgaacttcagaaatactagc
cctgctgttgggttgccgtctggagtggacatcaataatgccattatcatcggcacacac
aaaccttcagttgaggttttgtcattttcccctgatacgggtctgcaaattcttgctata
gggaccatctctttaacaaacaccatgggaacgattatcagtggctgcgttcctcaagat
gtacggcttgtactagttgatcggctttacattctttcagggttgaggaatggtatgctt
cttagatttgaatggcctcctgattcggctatctccccctctgattacacagttatgggt
tcctgcttggtaaattcattgggttctgcaatgtttactcctccaagcaacagagggtcc
ttgaggtccttttccagtttcttggagaagacaagagacagctttcccgttcaccttcag
cttattgccgttcgccgcatcggcattactcctgcttttctggttccattaagcgattac
cttgatgctgacataattgctttgagcgataggccatggttactgcagactgcaaggcac
agcttgtcatatacatccatctcttttcaaccttctacacatgtcactccagtttgctca
ggagaatgtcctaggggaattttatttgttgcagagaatagtcttcatttggtggagatg
gtgtcaagtaagaggcttaatgtgcagaagtttcatcttggaggcacaccaaggaaggtt
ttataccacagtgaaagcagattattacttgtcttgaggactgaattgcaaaatgattcc
tattcatctgatgtatgctgtgtagatcctctcagtgggtcattattgtcatcctttaag
tttgaacctggggagacaggtaaatgcatggaattggtaaaggttggacatgaacatgtt
ttggtggttggaactagcctatctgctggccctgctataatgcctagtggtgaagctgaa
agcacaagtggccgtctgatagtcctatgccttgaacacacacaaaattcagatactggt
tccgctacattcagttcaaggaccttttcatattctcagcgaagttcaccatttcatgaa
attggtgggtgctctgctgaacagctctctagtggtagtatttgtagcagcccagatgat
gatagttctgatggtatcaaactggaagaatctgaagcatggcacttacgattaacttat
tctaccatttggcctggaatggtacttgctgtatgcccgtatcttgatcgatatttcttg
gcttctgctggtaattctttctatgtctgtagttttccaaatgataacctccaaagggtg
cggagattggctgtaggaagaacacgctttgtgataatgacgttaactgcacactttacc
agaattgctgttggtgattgccgtgatggcattctcttctattcctatcatgaagatgca
aggaaactcgaacaagtctattgtgatccagttcagaggctagttgctgattgtattctt
atggatgttgatactgcttttgtatcagatcggaaggggagcattgcagtcttgtcttct
tcagaccatttagaggataatgcaagtccagaatgcaacttaacattgaattgctcatat
tatatgggtgaaatagccatgagcatcaggaagggatcattctcatacaaacttccagcg
gatgatgtgttaaggggatatgctgtagctaatactatctctgacctctcacataatagt
attatggccagtacattattagggggtgttgtgatcttcattcctgtcacaaggagagaa
tatgagctcttagaagctgtacaagctaggcttgtgattcacccgttgactgcgccaatc
ctaggcaatgatcataatgacttccgtggccgtgaaagttcggttgggacacggaagatt
ctcgacggtgatatgctggctcagttcttggaactgactagcatgcaacaggaagccgta
ttagcattacctctctcctcaccgaataaagtaatgctgagtacaaaacaatcacctcca
aggatcaccgttaatcaggtcgtccgactacttgaaagagttcattatgccctaaactga
DBGET
integrated database retrieval system
