Coffea arabica (coffee): 113691522
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Entry
113691522 CDS
T11342
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
carb Coffea arabica (coffee)
Pathway
carb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113691522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113691522
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113691522
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
MKRN1_C
Motif
Other DBs
NCBI-GeneID:
113691522
NCBI-ProteinID:
XP_027065486
UniProt:
A0A6P6SI48
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Position
6c:complement(8834764..8842716)
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AA seq
1202 aa
AA seq
DB search
MDGWIGAKSQIALEFPHLTLVTGASGNFSAVYHAPLVTVKSEKRIERPRIHRPAENLQNV
THFGAKTWRQFSLSLSPFSDLKSSVAFLFSLIADNQGGKKMQRQKSILSFLKRPSAEQQN
SGGRAPHFPPKHQNQIGAGIEFTKAISTSTIDDSVDDVRGTDTPPEKVPRQIFPVNDIES
GSKNSLFSSIMHKFARFDTTKISCNEKEASVSNNICSVLDKSKSQKEFEDGNLTSKQIGR
QSICHTNGTTKQESEGCPLVVGTDDIDVLGPDTPGMRPSVPRLKRLHDDICNFEQKSGFS
KSNATKRVKFLQDLDGEKKYLEDSEMASKFEWLHPSRIKDAKGKRPGDPLYDQRTLLIPP
DALRKMSASQKQYWEVKCQYMDVVLFFKVGKFYELYELDAEIGHKELDWKMTLSGVGKCR
QVGISESGIDDAVQKLIDRGYKVGRVEQLETSEQAKSRGSASVIERKLIGVLTPSTTTEG
NIGPNAVHLLAIKEDCFCPDNGSTSFGFAFVDCAALKFWVGSISDDASYAALGALLMQVS
PREVIYDSQGLSKEAQKALKKYSLTGSTVSMLTPALHADFGNASEVRNFIQLKGYFKESL
NRWDHILEGIMHQDLALCALGGLTNHLSRMMLDDTLHNGDVYSYQLYKGCLRMDGQTLVN
LEIFNNNADGAQAGTLYKYLDNCVTASGKRLLRNWICHPLRDVEKINHRLDVVEELIAHS
DIMLLVAQYLRKIPDLERLLGRVKASINSSAVLLLPLIGSKKLKQRVKAFGSLVKGLRIG
MDLLLLLQKEGFMTSSLAKVLCLPLLIGNDGLDKFLAQFEAAIDSDFPNYQDHDATDSSA
ETLSILMELFLEKAMQWSQVIHAISCLDVLRSFAVTTSFSSGAMCRPKILPHSRSVDSET
GGPILSIEGLWHPYALGENGGLPVPNNMHLGGNNSIYNPCTLLLTGPNMGGKSTLIRATC
LTVILAQLGCFVPCETCVLSLVDIIFTRLGATDRIMTGESTFLIECTETAAVLQTATQDS
LVLLDELGRGTSTFDGYAIAYAVFRYLVETVNCRLLFATHYHPLTKEFASHPRVSLQHMA
CSFKLKSKKSSPGEQELIFLYRLASGPCPESYGMQVAKMAGVPEMVVESASGAAQIMKKL
IGESFKSSEQRANFSTLHEQWLKTLLAISRAPETDSDDKFDTLFCLWHELKSSKKMGAIK
NI
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggatggctggattggtgcaaagagccaaattgccctagaatttccccatctgacgctc
gttactggggcaagtggaaatttctccgcggtctaccacgcgccactggtaacagtaaaa
tccgaaaaacggatcgaacggccacgaatacaccgcccagctgagaacctccaaaatgtt
acccattttggagccaaaacttggcgccaattctctttatcactgtctcctttctctgat
ttaaaatcgtcagtggctttcctcttctccctaatcgctgacaaccaggggggaaaaaaa
atgcagcgtcagaagtcgattctttcatttctcaaaagaccgtcggcggagcaacagaac
tccggcggccgagctcctcattttcctcccaaacatcagaatcagattggagctggtatt
gaatttaccaaagctatttctacctccacaattgacgattcggttgatgacgtcagagga
accgatactccgccggaaaaagtgccgcgtcagattttccccgtcaacgacattgagagc
ggaagcaaaaattcgctcttctccagtatcatgcacaagttcgcgagattcgatactacg
aaaatatcttgcaatgagaaggaagcaagtgtctcaaacaatatttgttctgttcttgat
aaatcgaagtcgcagaaagagtttgaagatggaaacttgacttctaagcaaatagggagg
caaagtatttgccatactaatgggacaacaaagcaagagagtgagggatgcccattggtt
gttggaactgatgacattgatgttcttggaccagacacgccaggcatgcgaccttcagtc
cctcggttaaaaaggttacatgatgatatttgtaatttcgagcaaaagagtggtttctcc
aagtcaaatgctaccaaaagggtgaaatttcttcaggatttagatggtgaaaagaaatat
ctagaggattctgaaatggctagcaagtttgaatggcttcatccttcaagaatcaaggat
gctaagggaaaaaggccaggtgatcctctatatgaccaaagaacactcttaataccacca
gatgctctaagaaagatgtcggcatcacaaaagcaatattgggaagttaaatgtcaatac
atggatgtggtgcttttctttaaagtgggaaagttttatgagctctatgaacttgatgct
gaaattggtcacaaggaacttgactggaaaatgacattaagcggggtgggtaaatgtcga
caggttgggatatctgagagtgggattgatgatgctgttcagaaattgattgatcgtggc
tacaaagttggacgggttgagcagttggagacctcagaacaagcaaaatcaagaggttct
gcttctgttattgaaaggaagctaattggcgttctcacaccatccaccacaactgagggc
aacattgggccaaacgctgtacatcttcttgcaataaaagaggattgcttttgtccagat
aatggttcaacttcttttgggtttgcttttgtcgactgtgctgcattaaaattttgggtt
ggttccatcagtgacgatgcttcttatgcagctttgggggctttgttgatgcaagtgtca
cctagggaagtgatctatgatagtcaaggactgtccaaagaggcacagaaagcattgaaa
aagtactcgctaacaggctctactgtatcaatgttgactccagctctgcatgctgatttt
ggtaatgcatcagaagtgagaaacttcattcagttgaagggttacttcaaagaatctctt
aacaggtgggatcacattcttgaggggattatgcatcaggatcttgcgttatgtgctctt
ggaggactcactaaccatttatcccgaatgatgttagatgacactttacataatggagac
gtttactcgtatcaactctacaagggttgtctaagaatggatgggcagacacttgtcaat
cttgagatttttaataacaatgctgatggtgctcaggcaggtacattgtacaaatatctt
gacaattgtgtcactgcatctggtaaacggcttttaaggaactggatctgtcatcctctg
agagatgtcgagaaaatcaatcataggcttgatgttgttgaggagcttatagcacattca
gatatcatgttacttgtggctcaatatcttcgcaagattccagacttagagaggttgctt
gggcgtgttaaggcaagcattaactcttctgctgtgctcttgctgccactgattggcagc
aaaaaattgaaacagcgagttaaagcgtttggatcacttgttaaaggcctgcgtattgga
atggatttgttattgctattacagaaggaagggtttatgacatcttcattagcaaaagtt
ctttgtcttcctctgttaattggtaatgatgggcttgataaatttcttgcacaatttgag
gcagcaattgacagtgactttcccaattatcaggaccatgatgctacagattcaagtgct
gaaacgctatcaattttaatggaacttttcctagagaaggctatgcaatggtctcaagta
atccatgctataagttgcttagatgtactaagatcatttgctgtaaccacaagtttttct
tctggggctatgtgtagaccaaaaattttacctcattcaagatctgtagattcagagaca
ggaggaccaatactttcaattgaaggtttatggcatccgtatgcccttggtgagaatgga
ggattgcctgttccgaacaacatgcatcttgggggcaacaatagtatttataatccctgt
actttgcttttgactggacctaatatgggtgggaagtcaacccttatacgtgcaacttgt
ttaactgttatactagctcagctgggctgttttgtgccttgtgagacttgtgtcctttca
cttgtggacatcatatttacacggcttggagccactgatagaattatgacaggcgagagt
acctttcttattgaatgtactgagacagcagcagtgttacaaactgccacacaagattcc
cttgtcctccttgatgaattgggtcgaggaactagcacatttgatggctatgcaattgca
tatgctgtattccgttatcttgttgaaacagtgaactgccgtttgttatttgctacacat
tatcatcctctcacgaaggaatttgcttctcatcctcgtgtttcactgcaacatatggcc
tgctcttttaagctgaagtccaagaagtcatctccgggtgagcaggaactgatttttcta
tataggctagcttctggaccatgtcctgagagctatggtatgcaagtggcgaaaatggct
ggggtccctgagatggttgttgaaagtgcttcaggggctgctcaaatcatgaagaagtta
ataggagaaagtttcaagtcaagcgaacaaagggctaacttctctaccctgcatgaacag
tggctcaaaactctgctggcgatatccagggcacctgagactgattctgacgataagttt
gatacattgttttgcttgtggcacgagctcaagagctcaaagaaaatgggagcaattaaa
aatatttaa
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integrated database retrieval system
