Coffea arabica (coffee): 113691576
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Entry
113691576 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113691576
03041 Spliceosome [BR:
carb03041
]
113691576
03036 Chromosome and associated proteins [BR:
carb03036
]
113691576
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113691576
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113691576
mRNA cycle factors
Common to processing body (P body) and stress granule
113691576
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113691576
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113691576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113691576
NCBI-ProteinID:
XP_027065584
UniProt:
A0A6P6SIC6
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All DBs
Position
6c:complement(8004502..8008605)
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AA seq
635 aa
AA seq
DB search
MPWNESTRSPRPIPSAYLPPHLRHQPTFTVTIPTSLARSSSRRGGGGGGRGRGRGFRGGR
APNPPRSYGRSRRNFSDDDPNPYNQKIMPEPPFDISEKFDELEVIDDDPSGVNNINAYDE
TPVETSGFDVPPPVTSFSEIDFCSGLSDNIKRCQFVKPTPIQRYAIPVAMAGRDLMACAQ
TGSGKTAAFCFPIITRILRDHHQLKSPTKKIDRNGGGGGFSLKTIMACPLALILAPTREL
SCQIHEEAKKFSYKTGVKVVVAYGGAPIVQQFRNLEKGVDILVATPGRLVDMIERAKVSL
KNVKYLALDEADRMLDMGFEPQVRKIVQQMEMPPAGVRQTMLFSATFPIEIQRLASDFLS
NYIFLAAGKVGSSTDLIAQRVEYVHDADKKNHLLNLLRAQRANGKHALTLVFVETKKGAD
ALQSWLSMKGFPSMAIHGDKVQMERERALKSFRSGLTPILVATDVAARGLDIPHVAHVIN
FDLPRDIGDYVHRIGRTGRAGKPGLATAFFSDKNAPLAKALVELMQEANQEIPPWLNEYT
ETSHAYGSGGSRSSRFSGVKFGGHNYRRGADNENYDYSNQFEDGTALESYPSQSSPYSSH
DSRADFPTSSRADSFHEGFYGHMLDHRTVVASGWD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgccgtggaacgaatcaactcgctcacctcgacccatcccatctgcatatcttccaccc
cacctccgccatcaacccacctttacagtcaccattcccacctcactggcccgctcttcc
tcccgccgaggaggagggggaggagggcgggggcgtgggcgtggctttcgcggtggtaga
gctccgaacccaccccgatcatacggccgatccagacgaaacttctccgacgatgacccg
aatccatataaccagaagatcatgcccgaaccaccctttgatatttctgagaaatttgat
gagctggaggtcatagacgatgacccttcgggcgtaaataatatcaatgcgtacgatgaa
actccggtggaaacgagtgggttcgacgtccctccgccggtgacgtcgttttccgagatt
gatttctgctcggggctcagtgataacatcaagagatgtcagtttgtgaagccgacgccg
atacagcgttacgccatcccggtggcgatggccggaagggacctcatggcttgtgctcaa
accgggtcgggcaagactgcggcgttttgctttcctattatcactaggatcctgagggac
catcatcaactgaaaagccccacgaaaaaaattgacaggaatggtggtggaggaggcttc
agtttgaagacgatcatggcatgtcctctggccctcatactagctcctactcgggagttg
tcttgtcagatacatgaggaagccaaaaagttttcctacaaaactggagtgaaggttgtc
gtggcatatggaggcgcacctattgttcagcagtttcgcaatctggaaaaaggtgttgac
atattggttgcaactcccggacgtctggttgatatgatagaaagagcaaaagtatctttg
aagaatgtcaagtatttggctctggatgaggctgatagaatgttggatatgggctttgag
cctcaagttaggaagatcgttcagcaaatggaaatgcctcctgcaggtgtaaggcagaca
atgcttttcagtgcaacattccctattgaaattcaaaggcttgcatcagattttctttca
aactacatttttctagctgcagggaaggttggatctagtaccgatctcatagctcaaaga
gtagaatatgttcatgatgcggacaagaaaaaccatttgttgaaccttttaagagcccaa
cgagcaaatggaaagcatgctttgacgttagtttttgtggaaacaaagaaaggagctgat
gccttgcaatcctggttgtcgatgaaagggtttccatcaatggctattcatggtgacaaa
gtacaaatggaaagagaacgggcattgaaatcttttagaagcggtctgactcccattctg
gtagcaacagatgtcgcagcacgaggcttggacattccacatgttgctcatgtcataaac
tttgacttgccaagggacataggtgactacgttcacaggataggtcggactgggcgtgct
ggcaaacctggactagcaacggcatttttcagtgacaagaatgcacctcttgcaaaggct
cttgttgaactgatgcaggaagcaaatcaagaaattcctccctggctcaatgaatacact
gagacatctcatgcctacggtagtggcgggagtcgatcaagccgcttcagtggtgtaaag
tttggtggccacaattaccgaagaggtgcagacaatgagaactatgactactcgaaccag
tttgaggatggaactgctctagaatcttatccttcacaatctagtccatattcttcgcat
gattctcgtgctgattttcctacatcttcccgagcagattcgtttcatgaaggcttctat
ggtcacatgttggaccaccgtactgttgttgccagtgggtgggattga
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