Coffea arabica (coffee): 113691614
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Entry
113691614 CDS
T11342
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113691614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113691614
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113691614
mRNA cycle factors
Common to processing body (P body) and stress granule
113691614
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
AreA_N
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
113691614
NCBI-ProteinID:
XP_027065641
UniProt:
A0A6P6SHP7
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All DBs
Position
6c:20857708..20865285
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AA seq
981 aa
AA seq
DB search
MTIPMDNNPDNSSRERVQKLFNKNVELENRRRKAAQARIPSDPNAWQQMRENYEAIVLED
HAFSEQHEIEYALWQLHYRRIEELRAHFNAAAASVSAGSNTSQNGKGPTRGGPDRLTKIR
TQFKTFLSEATGFYHDLMLKIRAKYGLPLGYFSDDSENQIPLCKDGNKSAEVKKGLISCH
RCLIYLGDLARYKGLYGEGDSKSRDFAAASSYYMQAASLWPSSGNPHHQLAILASYSGDE
LVAIYRYFRSLAVDSPFTTARDNLIIAFEKNRQSFAQLLGDARASSVKTTSVRGNGKGRG
RGESRVASKDNKVEASSVKEKTSTTLETFRAFGIRFVRLNGILFTRTSLETFGDVFAVVR
GDLLELLSSGTDEEYNFGSDATDCRLAIGRMVAILIFTIHNVNRETENQSYAEILQRSVL
LQNAFTATFEFMGHILERCSQLNDPSSSYLLPGIMVFVEWLACHQDIAVGSELEEKQASA
RLFFWNNCISFFNRLISSGFMFVDEDEEETCFSNMSRYDESETANRLALSEDFELRGFVP
LLPAQLILDFSRKHSFRSDSNKEKKARVQRIIAAGKALANVVRIGEEGIYFDTKSKRFVV
GVEPQVSDDFSLTTTLEAPKLSGVVEDNLVSGQMTPRALEQKPQLYMEGEEEDDEVIVFK
PSMTEKHLDGIALNPTSSEVFGSTMNAASIGGDVGSFSTGREGYIAQNAFSASLRPPTSL
VNSSYLQPVQPSTTWMAEQGTLVNGLGNLNLFENGFIKKPESQKHFGALPAQTFPVSLPD
SSFGTGSNFPNQLPETVVPSKLDSIMSLGADNISMKPSSVSPAGLKKNPVGRPLRHLGPP
PGFGSVPSKTVDESLSAMSFKNENATIPQMDDYSWLDGYQLPLVNRSVAGLNSSNHPGQG
YPIGSKSSSSMGMPSFPFPGKQTTTLQVPIENEKSWQDYQFSEQMKLFKEQQQQLQKANQ
QSAVLQQQYQGQSLWEGRFFV
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgactattccgatggataacaatccagataattcatcaagggagcgtgttcaaaaactt
tttaacaagaatgttgagctggaaaataggcgtcgtaaggcagctcaggccagaattcct
tctgacccaaatgcatggcaacaaatgcgggagaactatgaagctattgtcttagaagat
catgccttttctgaacaacatgaaatagagtatgccttgtggcagttgcattacagaaga
attgaggaattgcgagcacacttcaatgctgctgctgcttctgtttcagcaggatcaaat
acatcacagaacggtaaaggtccaacacgtggtggacctgatcgacttacaaagatccgt
actcaatttaaaaccttcctgtcagaggccactggattttatcatgatttaatgttgaag
attagggcgaagtatggtttgccattgggttatttctccgatgattcagagaatcagatt
cctttatgtaaagatgggaataaatctgcagaagtgaagaaaggattgatatcctgtcat
cgttgtttgatttatctgggggatcttgctcgttataagggcttgtatggtgaaggtgat
tctaaatctcgggactttgcagcagcttctagttactacatgcaagcagcttccctttgg
ccttcaagtggcaatccacatcaccagcttgctattttggcttcctactctggtgatgaa
ttggtggccatttaccggtattttcgaagcttggcagttgatagtccatttacaacagct
agagataacttgattattgcatttgagaagaatcgccagagctttgcccagctgctcgga
gatgccagagcttcctctgtcaagacaacttcagtgcgtggaaatgggaaaggaaggggc
agaggtgaaagcagggttgcatccaaggataacaaagtagaagcaagttctgtcaaggaa
aaaacatccaccacattggaaactttcagagcatttgggatacgatttgttcggctaaat
ggcattctcttcacacgcacaagcttggagacatttggggatgtttttgctgtggttaga
ggtgatttgctggagcttctttcttctgggactgatgaggagtacaattttgggtcagat
gctactgattgtagactggctattggcagaatggttgctattctcattttcaccattcac
aatgtgaatagggaaactgagaaccagtcctatgctgaaattcttcaacgctcggtccta
ctgcagaatgcatttactgctacttttgagtttatgggccacattcttgaacgctgcagc
caattaaatgatccttcatcgagctatctgttacctggtatcatggtttttgtggaatgg
ttggcttgtcatcaagatattgcagttggaagtgaattggaagaaaaacaagcgagtgct
aggttatttttctggaacaactgtatctccttcttcaacaggctcatatcttcagggttt
atgtttgttgatgaagatgaagaagagacatgtttttctaacatgagcaggtatgatgaa
agtgaaaccgctaaccggctggcattatctgaggactttgagttgaggggatttgttcct
cttcttcctgcgcaactcattcttgatttttcaaggaagcattccttcagaagcgacagc
aataaggaaaaaaaggcccgtgttcagaggattatagcggctggaaaggctcttgctaat
gtggtccggattggggaagagggaatttactttgacacaaaatcgaagagatttgttgtt
ggcgttgaacctcaagtttctgatgatttttcacttactactactttggaagccccaaaa
ttaagtggtgtagtggaggataatctagtttcaggtcaaatgactcctagggccttggag
caaaagccgcagttgtacatggaaggtgaagaagaggatgatgaggtaattgtgttcaag
ccatctatgactgaaaagcatttagatgggatagctttaaatccgacttcttcagaggta
tttggatctactatgaatgctgccagtatagggggtgatgttggatctttctctaccgga
cgtgagggttatattgcacagaatgctttcagtgcaagcttaaggccacctacttccctt
gtgaattctagttatctgcaaccagttcaaccaagtaccacttggatggcagaacaagga
actcttgtgaatgggcttggtaatttgaatttgttcgagaatgggttcataaagaaacct
gaatcgcaaaaacactttggagctttgccagctcaaacctttcctgtttcccttccagac
tcgagttttggcactggcagcaatttccctaatcagttacccgaaactgtggtaccttca
aagcttgattcaatcatgtctctaggagctgataacatatccatgaagccttcatccgtc
tcacctgctgggttgaagaaaaatccagtaggtcgacctcttcggcatctcggtcctcca
cctggctttggttctgtaccatccaaaactgttgatgagtcactatctgctatgtccttt
aagaacgaaaatgctaccattccccaaatggatgattacagctggctcgatggctatcag
ttgcctctggtcaatagaagtgtggccgggcttaatagttctaatcatccaggacagggt
taccctattggtagcaagagcagcagctcaatggggatgccgagctttccttttcctggg
aagcagacaactacattgcaagtcccaattgagaatgagaagagttggcaggattaccag
ttctctgaacagatgaaactattcaaggagcaacagcagcaacttcagaaagcaaatcag
caatctgctgtgttgcaacagcagtatcagggacaatctctttgggaaggtcgtttcttt
gtgtga
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