Coffea arabica (coffee): 113691623
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Entry
113691623 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113691623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113691623
03019 Messenger RNA biogenesis [BR:
carb03019
]
113691623
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113691623
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113691623
U7-dependent histone pre-mRNA processing factors
113691623
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
113691623
NCBI-ProteinID:
XP_027065650
UniProt:
A0A6P6SJE9
LinkDB
All DBs
Position
6c:complement(1893625..1909260)
Genome browser
AA seq
1335 aa
AA seq
DB search
MVGIMATVSRDKISSLINSVKFDANIPSKLEHLRSLSDELSNADSVLLSKFLSPLLDLLS
DRFSPVRKFTAEMIGDIGLKFAESIPEIVPVLIPVLKDDTPAVARQAIRCGMEIFRYVLF
KVALQGMYSNELDTSLESSWSWMLKFRDEICSLAFKPGSDGRRLLALKFMETVVLLYTPD
PNGSSDPPADLDSEGTLASVKEFNISWLRGGHPILNIGDLSVEASQSLGLLLDQLRFPTV
KSLNNLIIIMLINSLSAIASKRPAFYGRILPVLLGLDPSSSSGKGVHHALKSAFLSCLNC
THPGAVPWRDRLIDALRELKAVGVAEHAAIELASQNSGSLERKNDSLITQDRKPTSKALD
DIRNDASRKRTGMEESTDLLEDKMSVKRMKSVPVTSDGSTNDLSSDQGRVPSGGSGACKM
EEDSGPVQQLVGMFGALVAQGEKAIASLEILISSISADLLAEVVIANMRNFPSNRPQIEG
DNEQLFGRGSCPGMSGSNSEFDNLTLLLTNLLSQSSAVSQKDGGMDSLPSAANELELRGT
SGNTDVPGMSYVMEEASVPTTTPASSGGHVPCDTENGGSGTPSDVIDVGNEESDIPGLDL
PVPNDELVITSLGSTELKDASQEQVSSLARSSLELLPSVSTDRSEELSPRATVTDLSCVN
SLSATSSGLSTQLLLPKISAPVISLSDDQLDNLQKPILLRITDTYKQIATAGGSQVCLSV
LAYLGVKFPLDLEPWKLLQTHILSDYVNHEGHELTLRVLYRLYGEAEEDHDFVSSTTAKS
VYEMFLLTVAETLRDSFPWPDKCLNRLLVEVPYLPDSILKLLEGMCSPGGSNKDNNNPER
VRQGLSIVWSLILLRPPIRDACLTIALKSAIHPVEEVRDKALRLVVNKLYPQPSMSRQIE
AFAWEVLVSAANANTALESCDADGANAEFKDSDMGKPSNELPVVGTSSKGLSAVTDSFSI
SESISSSLLAEGQRRMALYFAICTKNHSLFRQIFVIYESTSKAVKQAVLHHIPKLVRAIG
PSPELLQILPDPPTGSMELVMQVLHTLIDGTTPSSELLSTIKKLYDTKVKDVEILILILP
FLPKDEVLAMFPHLVNSPLEKFQLALARVLQGSSSFCPAITPAEALIAIHGIDPERDGIP
LKKVTEACNTCFEQRQIFTQQVLAKVLNQLVEQTPLPLLFMRTVLQAIGAFPSLVDYIME
ILSRLVQKQIWKYPKLWVGFIKCAFLTKPESFGVLLQLPPAHLENVLHRTPALRDPLIAH
ASQPHIKSSLPRSVLVVLGLASDFHNSDLTKPTHSETGELGKSEHTHSSHAQSEETSKSD
KEVVTDKSKESSDAT
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaataatggcgacagtttccagagacaaaatctcgagtctcataaactcggtg
aagtttgacgctaatattccttcgaagctggaacacttgcgctcgctgagcgacgaactc
tcgaatgccgattctgtcttgctctccaagtttctctcccctcttctggacctcctctcc
gaccgcttcagtcccgttcgtaaattcactgccgagatgattggcgacattggattgaag
tttgcagaatccatacctgaaatagtacctgtattaatacctgtgttgaaggatgatacc
ccagcggttgctcgacaggctattaggtgtggtatggagatttttcgctatgttctattc
aaagttgcgctccagggaatgtattcaaacgagttggatacttctctggaatcatcttgg
tcatggatgctaaagtttcgcgatgagatatgctcgttggcatttaagccaggaagtgat
gggagaaggttgcttgcactgaagtttatggaaacagttgttctactctatacacctgat
cctaatggctcctcagatccacctgctgatctagattcagaaggtactttagccagtgtt
aaagaatttaacatatcatggcttcgagggggtcatcctatactaaatattggagatttg
tcagttgaagcaagtcagagtttgggtctgctgctcgatcagttgagatttccaacagta
aagtcactgaacaacttgattatcattatgcttatcaacagtctctctgcaattgcaagt
aaaaggcctgcattttatggacgtattctgccagttttacttggtttggacccttcaagc
tccagtggcaaaggggtgcatcatgctttgaagagtgccttcctctcttgcttgaattgt
actcatccgggtgctgtcccgtggcgtgatcgcttaattgatgctctgagagaattaaaa
gctgtaggagtggcagaacatgctgctatagaactagcttcacaaaatagtggaagttta
gagaggaaaaatgattctttaataacccaggatcgaaaacctacaagcaaggcccttgat
gatatacgcaatgacgccagcaggaaaagaacaggaatggaagaaagtactgatctactt
gaggataaaatgtctgtaaaacgcatgaaatctgtgcctgtcacctctgatggatcaaca
aatgatttaagttctgaccagggcagagttccttctggtggatctggggcttgtaaaatg
gaagaagacagtggccctgtccaacaacttgttggtatgtttggtgcattggttgctcaa
ggagaaaaagctattgcatcattagagattctcatctctagtatatcagctgacttgctt
gctgaagttgtaattgctaacatgcgaaattttccttcaaatcgccctcaaattgaagga
gataatgagcagttgtttggcagagggtcttgtcctggcatgtcaggaagcaattctgag
tttgataatttaacattgcttctcaccaaccttctttcacaatctagtgctgtctcacag
aaagatggtgggatggattctctaccttctgcagcaaatgagcttgagctaagagggacc
tcgggtaatactgatgtccctggtatgagctatgtgatggaagaggcttcggtgcctaca
actactccagcttcttcaggtggacatgtcccatgtgacacagagaatggtggttcaggg
acgccttctgatgttattgatgttgggaatgaagagagtgacatacctggtctagattta
cctgttcccaacgatgaattagttattacttctttgggttcaactgaattgaaggatgca
agtcaagaacaagttagtagtctagctaggtcatcactagaattacttccttcagtgtca
actgataggtctgaggaacttagccctagagctacagtcacagacctaagctgtgtcaac
tccttaagtgcaacttcttctgggttatcgacacagttgcttttgcccaagatttctgcc
ccagttataagtcttagtgatgaccagctagataacttacagaagccaattctcttgcgc
ataactgatacttacaagcaaatagctaccgctggaggttctcaagtctgcctttctgta
cttgcttatttaggagttaagtttccattggatttagagccatggaagttactacaaaca
catatactgtctgactatgtaaatcatgaggggcacgagttgactttgcgtgtcctctac
aggttatatggtgaagcagaagaggaccacgactttgtttcctcaaccactgctaaatct
gtatatgagatgtttcttcttaccgtggcagaaacattaagggattcttttccatggcct
gacaaatgtctaaatagattgcttgttgaagttccttacctgcccgattccattttgaaa
ttgcttgagggcatgtgttcccctggtggcagtaacaaagataacaacaatccggaacga
gttcggcaaggtcttagtattgtatggagtctgattttgttgaggcctcctattcgagat
gcctgcctaacaattgctttgaagagtgcaattcatccggttgaagaagtgcgagataag
gccttacgtctggtggtgaacaagctttatcctcagccttcaatgtcacggcaaatagaa
gcttttgcctgggaggtgttggtatcagctgcaaatgccaatactgcactggagtcatgt
gatgctgatggagctaatgctgaatttaaggattctgatatgggaaaaccatcaaatgaa
cttcctgttgttggtacctcttccaaagggttatcagcagtcaccgattcattttcaata
tctgaaagtatatcgtcctccttactagctgaggggcagcgacgcatggctctgtatttt
gcaatttgtacaaagaatcactccctctttcgccaaatatttgttatttatgagagtaca
tccaaggctgtaaagcaggcagtattacaccacatcccaaagcttgttcgagcaattggc
ccgtcgcctgagcttcttcaaatcttacctgatccaccaactggaagcatggagcttgtg
atgcaggttttacacacattgatagatgggacaacgccttcctcggaattgttatctacc
attaagaagttgtatgatactaaagtaaaggatgtagagattctaattctcatactgcca
tttttgccaaaagatgaggttttggcaatgtttccacatctcgtgaattccccattggag
aagtttcagcttgcccttgcacgtgtgcttcaggggtcttctagtttctgtccggcaata
actccagctgaagctttgattgcaatccatggaattgatccagaaagagatgggatccct
ttgaagaaggttacggaagcgtgtaatacttgttttgagcagcgacagatcttcactcag
caagttcttgcaaaggtcttgaatcaattggttgagcagactccccttcccctattattt
atgcgcacggtgctgcaggcaattggtgcttttccatcactggtggactatataatggaa
atcctttctcgccttgtacagaagcagatatggaagtatccaaagctatgggtcggattc
attaagtgtgcttttttgacaaaaccagaatcttttggtgtcttgcttcagcttccacca
gcacacctggaaaatgtattacatagaacgccagctctaagggatcccttgattgcacat
gctagccaaccacatattaaatcatcactcccaaggtctgtactagtggtgctaggatta
gcttccgactttcataattcagatttgacaaaaccaacccattctgagacaggagagttg
ggcaagtcggaacatacacactcaagtcatgctcaaagtgaagagactagcaagtctgat
aaggaggtggtgactgacaagtcaaaggaatcatctgatgcaacttga
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