Coffea arabica (coffee): 113691668
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Entry
113691668 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
113691668
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
90S particles
Other 90S particles
113691668
Pre-60S particles
Other pre-60S particles
113691668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
HEAT_Maestro
HEAT_EZ
Cnd1
HEAT_MROH2B_C
TbsP_N
Motif
Other DBs
NCBI-GeneID:
113691668
NCBI-ProteinID:
XP_071909259
UniProt:
A0ABM4UPP9
LinkDB
All DBs
Position
6c:17379381..17395418
Genome browser
AA seq
1162 aa
AA seq
DB search
METFSNATDICQQLLHRYGNSAAPQHRHLCATAAATRSLIQSESLPLSPFSYFAATISTL
SDQTELDPDAFAALSSFLSILLPLVPENAISPDKAKEAVEVVVEKINSDVNEVAPGNASA
RALVKSLGVLLGFCNLEDWDSVQLGFNSLLKFSIDKRPKVRKCAQDCIGAVFKSFKSCSV
IKKASKSVNSLLKDHMPVAIKISYLKAADESKKDIMSKPEHQEVLYTLNMLKSIVPYLSV
KVCIKILSQLVKLLKPESSALAQHVFEILQIMFETSSSEVIAPEAENIVKSLVSYISSQD
KNPMDSVLFAATSLKDLINKIHASEMTDWINHLPSVIGSMAGLLRSEASALQASNILQEL
INIHIDGKVIVAIQGQVEDDEAIFIERTAVKSICGVFEDLLTAQVGIPNEQLLQVISVLF
LKLREVSDVYLKSIVLKLAQMMTNDSGDSDTIHLKKCIGSAVIAMGPEKLLVLLPIALDT
KDYSCSNTWLIPILKEYVVGSSLGFFMEYFVTLADSLQQESRKVKKSEIGKDLETYACNC
WELLPSFCRFPTDTYQNFGALAKHLIPCIKDPPMLQIVAVALKELVDQNKKVLASDELPG
AKSSKMKNPVQELKKDQIYSKKIASKNMRALASWSQILLQALIDIFFDLPPDRLEILKDA
IGCLASITDPLTTKKIFISSLERLQLIKDLADSGEEEFHIKASVDNDETNATSREKDTER
CILLKLASCFVDKASEELITLLFKFTKHALEVLEGTGQPEAYQTLSRIIEKHPSFCFSHF
AELMDLLLNLKSPYNIDSLKSRFACLRTLFIHAVKEDLDDENTKAFLILNEIILALKDSA
EEGRKAAYDVLTDISSSLRSTSCTISDGHFHNFITMVMAYLTGSSPHIRSGAVSALSVLV
YNDTDLCLSVPDLIPSVLALLQSKAIEIIKAVLGFVKVLVSSLQENDLQKFLPDIVNGIL
PWSSVSRHHFRSKVTVILEIMVRKCRVAAIQSLAPQKYHDFLRSVLKNRHGKTSSKDAGI
TETESNPSDISQGSKHRWQKRKYEESTSSTKGGGLTGSRKRARHQRQKGDLPSAKKPFKP
ASSIKSQESVDREGDANHDRQNAKQSQWQRRDRKGSFMKGQSRGKRKRDFVETKLRNGKT
HKPAAKLTNRKRVGKKQSKINK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgttctcaaacgctaccgacatctgccagcaactcctccaccgatacggaaac
tccgccgcaccacagcaccgccacctctgcgccaccgcggctgccacccgttcacttatc
caatcagaatccctccccctctctcctttctcttattttgccgccactatctccactctc
tccgaccaaacagaattagaccccgacgctttcgccgcgctttcgtcttttctatcaatt
ttgcttccgctagtaccggaaaatgctatttcgccggataaagcaaaggaggctgtggag
gttgtggtggagaagataaatagtgatgttaatgaggttgctccggggaatgctagcgct
agagctttggttaaatctctaggggttttgctagggttttgtaatttggaggattgggat
tctgttcagctggggttcaattcgcttcttaagttctccattgataagagacccaaggtc
aggaaatgtgctcaagattgtattggggccgttttcaagtcattcaaatcttgttctgta
attaagaaggcaagcaaatcagtaaactcattgctcaaggatcacatgcctgtggcaatc
aaaataagttatttaaaggctgcggatgaatccaaaaaagatatcatgtctaaacctgaa
caccaagaagttctttatactttgaacatgttgaaaagtattgttccctatctttctgtc
aaagtatgtataaaaatactctctcaattggtgaagcttctgaagcctgagtcctcggct
ttggcccagcatgtttttgagattctccaaattatgtttgaaacttcaagctctgaagtt
attgccccggaggccgagaacattgttaaatcccttgtctcttacatatcttcgcaagac
aagaatcctatggactctgtactctttgctgcgacttcattgaaagatcttattaacaaa
attcatgctagtgagatgacagattggatcaaccatctaccttcagtgattggctcgatg
gcaggtcttctcagatctgaggctagtgctttgcaggcttcaaatattttgcaagagttg
atcaacattcatattgatggaaaagttatagtagcaatccaaggtcaggttgaagatgat
gaggctatctttattgagcgaacagcagtaaaatccatttgtggagtcttcgaagacctg
ttgactgctcaagttggcattccaaatgagcagcttctgcaagtcatctctgtcttgttc
ttaaaacttagagaggtgtcagacgtttatttgaagagcatagtgctcaaactcgctcaa
atgatgactaatgatagtggtgattctgacacaatacatctcaaaaagtgtattggatct
gcagttattgctatggggcctgaaaagttacttgttcttctacctatcgcccttgataca
aaagattattcctgttcgaatacatggttgataccgatattaaaggaatacgtagtggga
tcatctttaggattctttatggagtattttgtaactcttgctgattccttacagcaggaa
tcccgtaaagttaagaaatcagaaattggcaaagatctggagacttatgcctgcaactgt
tgggaattattaccttccttctgtcgctttccaactgacacataccagaattttggagct
ctagccaaacatttgataccttgtatcaaagacccacctatgcttcaaattgtggcagtt
gccttgaaggaactagtagatcaaaacaaaaaggtacttgcatctgatgagcttcctggt
gcaaaatcatcaaagatgaaaaatcctgtgcaagagttgaagaaagatcagatttactcg
aaaaagatcgcaagcaagaatatgagggctttggcatcatggtcccagattttgcttcag
gccttgatagatatcttctttgacttacctcctgatagacttgaaattttgaaggatgca
attggatgcttggcatctattactgatcctttgacaaccaaaaagatttttatttcttca
cttgagaggcttcagctgatcaaggaccttgctgactctggagaagaggagtttcatatt
aaggcttcagttgacaatgacgaaactaatgccacttccagggagaaagatacagagagg
tgcatattgctgaagctagcatcatgttttgttgataaagccagtgaggaattgattacc
ctgctatttaagtttacgaaacatgctttagaggtgttggaaggaactggccagcctgaa
gcatatcagactttaagcagaataatagagaagcatccttcattttgcttttcacacttt
gctgagttgatggacttgttgctgaatctgaagtctccatacaatattgattcgcttaaa
agccgctttgcttgtctccgtaccttgtttatccatgcagtaaaggaagatttggatgat
gaaaacacgaaggcttttcttatcctgaatgagattattcttgcactaaaagattctgcg
gaagaaggcagaaaagcagcttatgatgtccttactgatatcagttcgagcttgcgaagc
acttcctgcaccatttctgatggacattttcacaatttcatcaccatggttatggcttat
cttacagggtcgtccccccatataaggagtggtgcagtttctgcattgtctgtacttgtt
tataatgatacagatttatgcctttctgtacctgacctgattccatctgttttggctttg
ctgcaaagtaaagctattgagattataaaagctgttctgggctttgtgaaagtactcgta
tcaagtcttcaagaaaatgacctgcagaaatttctccctgacattgtcaatgggatttta
ccttggtcatctgtgtctcgccatcatttcagatcaaaggtcacagttatcttggagatc
atggtgagaaagtgtcgagttgcagcaatacagtcacttgcaccccagaagtatcacgat
tttctaaggagcgtcttaaagaatcgtcatggcaagacaagttctaaggatgctggcatc
actgagactgaatcaaatccttcagatatatcccaagggagcaagcacaggtggcaaaag
agaaagtacgaggaatctacaagttcaacaaaaggaggaggtttgactggatctaggaaa
agagcaaggcaccagagacagaaaggcgatcttcctagtgccaaaaagccttttaagcct
gctagtagcatcaaatcacaagagtcagtggacagagagggtgatgccaatcatgataga
caaaatgcaaagcagtcacagtggcaaagaagagatagaaagggtagttttatgaagggt
cagtcaagggggaagaggaagagggattttgtagaaactaagctgaggaatgggaaaact
cataaacctgctgccaagctaaccaatcgtaaaagggtagggaagaagcagtcgaaaatt
aataaatga
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