Coffea arabica (coffee): 113691769
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Entry
113691769 CDS
T11342
Name
(RefSeq) oligouridylate-binding protein 1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113691769
03041 Spliceosome [BR:
carb03041
]
113691769
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
113691769
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
113691769
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_PARP14_3
RRM_5
RRM_7
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
113691769
NCBI-ProteinID:
XP_027065864
UniProt:
A0A6P6SJ41
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Position
6c:11278833..11285323
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AA seq
409 aa
AA seq
DB search
MQQQRLKQQQQQQQQALMQQSLYHPGLLAHTQIEPILSGNLPPRFDSSTCRSVYVGNIHP
QVTEPLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAIVTLNGRHLFGQPIKV
NWAYASAQREDTSNHFNIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKTGRSRGFG
FVSFRSQQEAQSAINDLNGKWLGSRQIRCNWAAKGAANGDDKQSLDAKSVVELTNGTSED
GQEKSGEDAPENNPQYTTVYVGNLAPEVTSVDLHRHFHSLGAGVIEDVRVQRDKGFGFVR
FSNHAEAARAIQLGNACILFGKPIKCSWGSKPTPPGTSSTPLPPPAVAHMPGFSATDLAA
YERQIALSKMAGAQALMHPQGQRIGAASQAIYDGGYPGIATTQPPIYYQ
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagaggctgaagcagcagcagcagcagcaacaacaagcattgatgcagcaa
tctctctaccacccgggtcttttagctcatactcagatagagcctatattgagtggaaat
ctgcctccaagatttgattcaagtacatgccgcagtgtatatgttgggaatatccaccca
caagtgacagaaccacttcttcaagaggttttctctagtactggtcctcttgaaggttgc
aagctcatcagaaaggagaagtcatcctatggttttgtggattactttgaccgaagatca
gctgcacttgctattgtgactcttaatgggcgacatctatttggacaacctataaaagtt
aactgggcatatgccagcgctcagagggaggacacgtcaaatcacttcaacatttttgtt
ggcgaccttagtccagaggttacagattccacattgtttgcttgcttttctgtctatcct
agctgctcagatgcaagagttatgtgggatcaaaagactggtcgttcaagaggttttgga
tttgtttctttccgtagccagcaggaagcccaaagtgctataaatgatttgaatgggaag
tggcttgggagcagacaaatacgctgcaactgggcagcaaaaggtgctgctaacggtgat
gacaagcagagcttagatgcaaaaagtgtggtggaacttacaaatggaacatcagaagat
ggtcaagagaagagtggcgaagatgctccagaaaataatccccaatataccactgtttat
gttggcaatcttgccccagaagtgacatcggtggatctccatcgtcatttccactctctt
ggagctggagtgattgaagatgtccgtgttcaacgagacaagggttttggttttgtgaga
ttcagcaaccatgccgaagctgctcgtgctattcagttgggaaatgcatgtattctgttt
ggcaagccaatcaagtgctcctggggtagcaagcctactcctcctgggactagttccact
cctctacccccgccagctgtagcacacatgccaggattttcagccacggatcttgcagcc
tacgagcgacaaattgctttgagtaaaatggctggtgcacaagctctgatgcatccccag
ggtcagagaattggagctgctagccaggcaatctatgatggtggatatccgggtattgct
acgacccagccacctatatattatcagtaa
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