Coffea arabica (coffee): 113691792
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Entry
113691792 CDS
T11342
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
113691792
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
90S particles
Other 90S particles
113691792
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP5
OB_RRP5_4th
OB_RRP5
OB_PDCD11
Spt6_S1
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
PRP6_TPR
NRDE-2
Motif
Other DBs
NCBI-GeneID:
113691792
NCBI-ProteinID:
XP_027065890
UniProt:
A0A6P6SIE6
LinkDB
All DBs
Position
6c:complement(63520485..63549990)
Genome browser
AA seq
1940 aa
AA seq
DB search
MAKKSPNKKSSKKPSLINLQKPSKKSFKSKPPRDGGKGTKTELGDPVLSHQQKQASLALQ
LEDDVPDFPRGGGSSLSKQELEDVRAEVDAEFEAEERVSKKKNKRAKRLEWRSQSAEDDM
GSLFGDAFTGKLPRFANKITLKNISPGMKLWGVISEVNQKDVVVSLPGGLRGLVRASEAF
DPLPNDGVKGDKESNFLSSIYHVGQLVSCIVQQVDDEKKETGKRRIWLSLRLSLLHKGLT
MDIIQEGMVLSAYIKSIEDHGYTLNFGFGSFTGFMPESRQSERKDTEVKVGQLIQGVVKS
IDKTRKLLYMSSDSDMVSKCVTKDLKGISIDLLVPGMMVDARVRSSLENGIMLSFLTYFT
GTVDIFNLSETFPSANWKDYYTQGKKVNARILFIDPTTRAVGLTLNPHLVHNRAPPTLVQ
TGDIFDQSKIIRIDRGLGLLLEIPSSPVATPAYVSVSDVADKEIKKLEKNFKEGSLVRVR
VLGLRHLEGLATGILKASAFEGTVFTHSDVKPGMVVKAKVIAVDSFGAIVQLGSGVKALC
PLRHMSEFEITKPRKKFQVGAELVFRVLGCKSKRITVTHKKTLVKSKLEILSSYADAIEG
LITHGWITNIENHGCFVRFYNGVQGFAPRSELGLDLGCVINSMYHVEQVVKCRVTSSIPA
SRRINLSFTAKKTRIAEDDMMNLGSLVSGVVEQVTPHAVVVCVNSKSHIKGTISPEHLSD
HLGLGALLKSVLKPGHQFDKLLVLDIEGSNLILTAKYSLVNSARDLPLDIKQVCPHSIVH
GYVCNLIEAGCFVRFVGRLTGFAPKHKAVDDRRSDVSEVFSIGQSVRCNVVDVNSETNRI
TLALKQSLCSSTDASFIREYFLLEDKISKLQLLGSESSELNWVDEFQVGSIIEGKVNEKK
EFGVVISFEKYKDIFGFISQYQLDGIAVDFGTTVQAAVLDISKSERLLDLSLKPQFVERS
KREGSSVHSVKKKRGRETHKGLDLKQTVHAQVEIVKEDYLVLSIPTHNFALGYASFADYN
TQMLPRKQFVNGQSVVATVADLPSPSTGGRLLLLLKSMNEVMDSSTSKRAKRKANIDVGS
VVQAEITEIKPLELRVKFGSGFHGRVHITEATDDNLAEDPFNSLRVGQTVNAMIVSKCNR
NRSYQWELSLKHSLLAGAGEVEDGLLVEDFDYPIGGRVSGFVYKVDKEWAWVTVSRDVRA
QLYILDSASEPTELEKFEKHFYIGMALSGYVIKADKEKKLLRIVLHPILTHVDSACSLSD
DCSTSPLNGNKACHISVGGFVGGRISKILPGVGGVLVQIDQHLYGKVHFTELTKAWVSDP
LAGYHEGQFVECKVLEISHSFKGTVHVDLSLRLTSDDMDHGKFADLYPSMNSISPRVENI
EDLKPDIVVKGYVKNVSSRGCFIMISRTVDAKILLSNLSDGFVENPETEFPVGKLVIGRV
ISVEPLSKRVEVTLKTSNSVSVSKLDVNSLNKLTVGDFISGRVKRIESYGLFVTIDDTNL
VGLCHVSELSDEHIDNIETKHKAGEVVRAKVLKVDKERHRIALGMKNSYFTGDTNDQKLS
EHGTNSAIEENHVFEGTGAISFPGIDDFDIKSDNEKLSVLGKLESRASIQPLDVPLDEIE
NSDVDNVVNQDHENPNAADIMDEKSKKREKKKAKVEREQEIQAAEERLLEKGIPRNADEF
EKLIRTSPNSSFVWIKYMAFMLSLADVEKARSIAERALRTINIREESEKLNIWVAYFNLE
NEYGNPPEEAVKKLFYRALQYCDPKKLYLALLGMYERTEQHKLADDLLGKMIKKFKSSCK
VWLRRVQRLLQQNHDGIQSNINRALLCLPRHKHIKFISQTAILEFKCGVPDRGRSLFEGM
LREYPKRTDLWSIYLDQEIRLGDVDVIRSLFERAISLSLPPKKMKFLFTKYLEYEKSLGD
EERASTVREKAREYVESNVK
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaatctccgaacaagaaatcatctaagaagccgtctttgataaatcttcag
aagccatcaaagaaatccttcaaatcaaaaccacctagagacggcggcaaaggcaccaaa
accgaattgggcgaccccgttttgtctcatcaacaaaagcaagcttcacttgccctgcaa
ctcgaagatgatgtccccgacttccccagaggtggaggtagttcactgagtaaacaggag
ctggaggacgtgagagcagaggtagatgcagagtttgaggcagaggagagagtttcgaag
aagaagaacaaaagggcaaagcggttggaatggagaagccaatcggcagaagatgatatg
ggctccctttttggtgatgcattcaccggaaagttgcctaggtttgcaaataagatcact
ttgaagaatatttctcctggcatgaagctttggggcgtaatttcagaggtaaatcagaaa
gatgttgtggttagtcttccagggggtttgcgtgggttagttcgtgcgagtgaagcattt
gatcctcttccaaatgatggagtaaaaggggataaggaaagtaattttctttcaagcata
tatcatgttgggcagcttgtctcgtgcattgtgcaacaagtggatgatgagaagaaagaa
actgggaaaagaagaatttggctttcccttcgtctttctttactgcacaaaggcttgaca
atggatattattcaagaaggaatggttcttagtgcatacataaaaagcattgaagaccat
ggttatacacttaattttggatttggttcctttactggattcatgcccgaaagccgccaa
tctgaaagaaaggacacagaagtgaaagttgggcagcttattcaaggggtcgttaaaagc
attgacaaaactcgaaaattgctttacatgagctctgattctgatatggtgtcaaaatgt
gtgaccaaggaccttaaaggtatttcaattgatcttctcgttccaggcatgatggttgat
gctcgtgttcggtcatcccttgaaaatggcatcatgttatcattcctcacatacttcacg
ggaactgtagatatatttaacttaagtgagacttttccctctgctaactggaaagattat
tacactcaaggcaagaaggtcaacgctcggatattatttatagatcctacaactagagct
gttggtttgactctgaatcctcacctagttcataatagagctccacctacactggtccaa
actggtgatatctttgatcaatcgaaaataatcaggattgacaggggtttgggccttttg
ctcgaaatcccctcttctccagtagcaacccctgcgtatgttagtgtgtctgatgttgct
gacaaggaaatcaagaagctagagaaaaatttcaaagagggaagtcttgtgcgagttaga
gtgcttggacttaggcacttggaagggcttgctactgggattctgaaggctagtgctttt
gaagggacagtctttactcattcagatgtcaagcctggaatggttgttaaggctaaagta
attgcagttgacagctttggtgccattgtgcaacttggaagcggtgtgaaagcactttgt
cctcttcgacacatgtctgagtttgagataacaaaacctagaaaaaagttccaggttgga
gctgaactagttttccgtgttcttggttgcaagtccaagaggatcactgttacacacaag
aaaactctagtgaagtcaaagcttgaaattcttagttcatatgccgatgccattgaagga
ctaataacccatggatggataacaaatattgagaaccatggatgctttgttcgcttttac
aatggtgtacaaggatttgcaccaagatctgaacttggtttggatctgggatgtgtcata
aattcaatgtatcatgtcgagcaggttgtgaaatgtagagtgaccagctctatacctgcc
tcaaggagaatcaaccttagtttcactgcaaaaaaaacaaggattgctgaagatgatatg
atgaatcttggaagccttgtatctggagttgttgagcaagtaactcctcatgcagttgtg
gtttgtgttaactccaaaagtcacattaagggtaccatctctcctgaacatttatctgac
cacctagggcttggtgcattgctgaaatcagttctgaaacctggacaccagtttgacaaa
ctcttggttcttgatattgaaggcagcaatctcatactcactgctaagtattcgcttgtg
aattctgcccgagaccttcctttggatatcaagcaagtttgccctcattcaatagtccat
ggatatgtgtgtaatctaatcgaagctggttgctttgttcgctttgttgggcgtttgact
ggttttgccccaaaacataaggcagtagatgacaggagatctgatgtttctgaagtcttt
agcattggtcaatctgttcgctgtaacgtagttgatgttaatagtgaaacaaatagaata
acacttgcattgaagcagtcgttgtgttcctcgacagatgcatcctttattcgagagtac
tttcttttggaagacaagatatctaaactgcaattgctgggctctgagagcagtgaatta
aattgggttgacgaattccaagttggaagtataattgagggaaaagttaatgaaaaaaag
gagtttggtgtggttatcagctttgagaagtacaaagacatttttggcttcatttcccag
taccagttggatggaattgcagtggattttggtacaactgttcaggctgcagttcttgat
atatcaaagagtgaacggctgttggatttgtcattgaaaccacagtttgttgaaaggtca
aaacgtgagggctccagtgtgcactctgttaagaagaaacgtggaagggaaacacataaa
gggctggatctgaaacaaactgttcatgcgcaagttgagattgtgaaagaggattacttg
gttctgtcaatacctacacataattttgctttgggttatgcctcgtttgctgattacaat
actcaaatgcttcctcggaaacagtttgttaatgggcagagtgtcgtagccactgttgct
gatcttccaagtccatcaacaggtggaaggttgctactactgcttaaatctatgaatgag
gttatggattcatccacttcgaagcgcgcaaaaaggaaggccaacattgatgttggttct
gttgttcaggcagagattactgaaattaagcctcttgaacttcgagtaaaatttggttct
ggttttcatgggagggtacacattaccgaggctacagatgataatcttgctgaagatccc
ttcaacagcctcagggttggccagacagtcaacgcaatgattgtttcgaagtgtaatcgt
aacagaagctatcaatgggaattgtccctaaaacactcgttacttgcaggtgctggtgaa
gtagaagatgggcttcttgtagaagattttgattaccctattggtggaagagtttctggg
tttgtttataaagtggacaaggaatgggcctgggtgactgtatctcgagatgtcagggca
caattgtatattttggacagtgcatctgagcctactgaacttgaaaagttcgagaagcac
ttttacataggcatggctctttcaggatatgtcataaaagcagataaggagaaaaaattg
ttacggattgtcctgcacccaattctcactcatgtagacagcgcttgtagcctgagtgac
gattgttcaactagtcctttaaatgggaataaagcatgccatattagtgtaggtggtttt
gtgggtggcagaatatctaaaatccttcctggtgttggcggtgtacttgttcaaattgat
cagcatctctatggtaaggttcattttactgaattgaccaaggcatgggtctcagatcca
cttgctggatatcatgagggtcaatttgtggaatgcaaagtccttgaaatttcccattct
ttcaagggcactgtacatgttgatctgtcactacggctcacttcggatgatatggatcat
ggaaagtttgctgatctctaccctagcatgaactccatcagtccacgtgtggagaatatt
gaagatcttaaaccagacattgttgtaaagggatatgttaagaacgttagttcaagagga
tgttttattatgatttctcggacggttgacgcaaaaatcctcttgtcaaacttgtcggac
ggctttgttgagaatccagagacagaatttccagttgggaaacttgtcattggcagggtg
atatctgtcgaacctttgtccaagcgagttgaagttactcttaagacatccaacagtgtc
agtgtctcaaagttggacgtaaattctttgaataagctcactgttggagatttcatttct
ggaagagttaagcgcattgagtcatatggcttgtttgttaccattgatgacacaaatctg
gttggcttatgccatgtctcagagctttctgatgagcacatagacaacattgaaacaaaa
cacaaagctggggaggtggtcagagctaaagttttgaaggtcgataaggaaagacaccgc
attgctcttggaatgaaaaattcatatttcactggtgatacaaatgatcaaaaactttca
gaacatgggactaattctgctattgaggaaaatcatgtttttgaaggcactggggcaata
agttttccagggattgatgattttgatatcaagtccgacaatgaaaagctttcggttctt
ggtaaactggaatcgagggcttcaatacaacctcttgatgttccattggatgaaattgaa
aactcagatgtggataatgtagttaatcaagatcatgagaatcccaatgctgcagatatt
atggatgaaaaaagcaagaaacgtgaaaagaagaaagcaaaggtggagagggaacaagaa
attcaagctgctgaggagagacttctagaaaaaggtattccaagaaatgctgatgaattt
gagaagcttattaggacctccccaaatagcagctttgtatggataaagtacatggcattc
atgctctctttggcagatgttgaaaaggcacgttccattgctgagagggctttgagaact
ataaacatccgagaggagtctgagaagctgaacatctgggttgcatacttcaacttagaa
aatgaatatggaaatcctcctgaggaagctgttaagaaactattttatagagcattacag
tactgcgatcccaaaaagctgtacctggcccttctgggaatgtatgaaaggaccgagcaa
cataagttggctgatgaccttcttggcaaaatgatcaagaaattcaagagttcatgcaaa
gtttggctaagacgggttcaaagactcttgcagcaaaaccatgatggaatacaatcaaat
ataaatcgggctcttttatgtctacctcgccataagcatatcaaatttatttcacagact
gcgattcttgagttcaaatgtggggtacctgacagggggcgatcattgtttgagggaatg
ctgcgcgagtatcctaaaaggacggacttgtggagcatttatcttgaccaggagattcga
ctaggtgatgtagatgtgatccgttcgttgtttgagagggcaataagtttgagccttccc
cctaagaaaatgaagttcttattcacgaagtatctggagtatgaaaaatctcttggtgac
gaagaaagagcaagtactgtgagagaaaaagcaagagagtatgttgagagcaacgtcaaa
tga
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