Coffea arabica (coffee): 113692163
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Entry
113692163 CDS
T11342
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113692163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113692163
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
113692163
SWR1 complex
113692163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-binding
Myb_DNA-bind_6
ETC_C1_NDUFA5
Motif
Other DBs
NCBI-GeneID:
113692163
NCBI-ProteinID:
XP_027066330
UniProt:
A0A6P6SJM1
LinkDB
All DBs
Position
6c:complement(15219361..15238089)
Genome browser
AA seq
2047 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPKEPRRPKAHWDHVLEEMVWLSKDFESERKWKLAQA
KKVAIRASKGMLEQATRGEKRVKEEEHRLKKVALNISKDVKKFWLKIEKLVLYKHQLELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVSSPGHCKLDSSSPQERMRIEYKEGDYDRGS
AEPNIESQSNGPDIDGDYDMDSEDESEDDEHTIEQDEALITKEEREEELAALQDEIDLPL
EELLKRYEERVSRKASPEQTAVATGANGPVENDNTGKENKIGTVSANGRSSSPVSPGRRC
VGSNGFLHNSNNHFLDVQVHKVRTPNKFQDWEKQCILDDYSDEQDDEDFDIGTGEEKDDF
MDDETTLLEEEELAKAEPNDAPNEIALLQKESEIPIEDLLARYKKDWDSEKDEHDDTGSE
YASASENFMDSLEPKDRELKELKVSLNREDNFSAFQPAACSEVEEPETEYVAKAGGEGES
ADIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKKLNGI
LADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFG
SAKERRIKRQGWLKPNSFHVCITTYRLVIQDAKVFKRKKWKYLILDEAHLIKNWKSQRWQ
TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGMVEGQEK
VNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKYEHVIYCRLSKRQRNLYEDFIASSETQA
TLASSNFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMTGIDLQLSSSVCAMLTPRPFST
VDLGDLGLSFTHLDNCMSSWESEDIQAIATPSSLIEGRVNQVCGEVGHAYKHKKFHGMNI
FEEIQKALAKERQREAKERAASIAWWNSLRCRRKPIYSTGLQELVTIKNPVYAIHDQKSN
PLSYSYSSMLADIVLSPVERFHKMVDQVESFMFAIPAARAPTPVCWCSKGGSSVFIQPTF
KERCLEVLSPLLTPLRPAVVRRQVYFPDRRLIQFDCGKLQELALLLRRLKLEGHRALIFT
QMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGIN
LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVL
DDLVIQSGGYNTEFFKKLDPMELFTGHQKISVENVQKEDNCNESSEVPLSNADVEAALKY
AEDEADYMALKKVEQEEAVENQEFTEEAIGRLEEEEFGNEEDLKTDEPAEHDGQVTASNK
DSVAALNVEGPVEGGSITFAGKEDDFDMLADVKEMAAAAAASGQTILSFENQLRPIDRYA
IRFMELWDPIIDKTATQSQVQFEEKEWELDRIEKLKEDMEADIDDDEEPFVYESWDADFA
TEVYRQQVEALTQHQLMEELEAEAKEKELAEYGYSDSVRNQISTVRKPKSKKKTKKAKFK
SLKKGALASEFKAVKEESAMELMSIDGESLYDDEMTSSGDVSPCRRLEKKRKQAPWVDEE
RSTKKSKKFKKAPEMCSSVLDSKMLGKLQNDTKYSRQCESRVVDVELKSVSRSKIGKKVS
IIPMPVKRVMTIRPEKLKKKGNMWPKDCFPVPDFWSPQEDAILCAAVHEYGANWSLVSEM
LYGMSTGGLYRGRYRYPVHCCERFRELIQRYVLTSTDPVNNDKASNTGSGKGLLKVTEDH
TRMLLDVASQFSDAEPLIQKHFFALLSSVWRFSSLKTNRHNLAPSQNASSSYRKAVTSPL
NVVSRDFSGESLESMKFTNSFACGKLVAAALCDDHTAKKDDNVPISKQRDEASVVSERLD
VTLQLLGGEHDATLNLPSVVNLSILGRETPPSSKTIGQEKHLRAASRACLEDSFGWATLA
FPVGDAKSRTPMKVQSLGKHKLLVSDSNKSSRSKLRKTTTESSDARNLAADPVLHPVFSD
FCVKDDVVSTSSAEIGMADLCVSSPFNINPELPMATDSSDMVAHDYVPGFISGLDDYLIL
PEFTDIG
NT seq
6144 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaaaggtcccaggtctaagcttgaccatgaaacgcgagccaggcggcagaaa
gcgcttgaagctccaaaagaacctcggcgtcctaaagcacattgggatcatgttttggag
gagatggtttggttgtcaaaggactttgagtcagagagaaagtggaaattggcacaggca
aagaaggttgcaatcagagccagcaagggtatgttggagcaggctacaagaggagagaag
agagtgaaggaagaagagcataggttgaaaaaagttgcactcaacatttctaaagacgtg
aagaaattttggttgaaaatagagaagctggttctttacaagcatcagctggagcttgat
gagaagaagaaaaaggcacttgataaacaacttgagttcctccttgggcaaaccgaaagg
tactcaacaatgctggcagagaaccttgttagctctccaggtcattgcaaattggactcg
agttcaccgcaagaacgaatgaggatcgagtacaaagaaggtgactatgacaggggaagt
gctgaaccgaatattgaatctcaatcaaatggaccggatatagatggggattatgatatg
gactctgaggatgaatcggaagatgatgagcatactattgagcaggatgaggctctcata
accaaagaagaacgggaagaagaattagcagctttacaagatgaaatagatcttcctctg
gaggagcttcttaaacgctatgaggagagagtcagcagaaaagctagtccagaacaaact
gctgttgctactggagctaatgggccagttgaaaatgacaatacaggcaaagagaacaaa
attggtactgtgtctgcaaatggtagaagcagctcaccagtatctcctggtcgtcgttgt
gttgggagtaatggctttttacacaattccaacaatcactttttggatgttcaagtgcac
aaagtaagaactccaaataaatttcaagactgggagaaacagtgcattttggatgattat
agtgatgaacaggatgatgaagattttgacattggtacaggagaggaaaaagacgatttt
atggatgatgagacaaccctgttagaagaggaagaactagccaaggcggaacccaatgat
gccccaaatgagattgcgctattgcagaaagagagtgaaattcctatagaagatctgctt
gcaaggtataaaaaggactgggactctgagaaagatgagcatgatgacactggatctgaa
tatgcttctgcttctgagaattttatggattcacttgaacccaaggatcgtgagttgaag
gagcttaaagtatctttaaacagagaagataattttagtgcatttcagcctgctgcttgc
tctgaggtagaagaaccagaaactgaatatgtagcaaaagctggaggagagggcgaaagt
gcagacataattgctgatgcagctgctgctgctagatcggcacaacccacgggtaataca
ttctcaacaacgaaagtgcgtacgaaattcccttttcttctcaagtatcctcttcgtgag
tatcaacatattggcttggactggcttgttaccatgtatgagaagaaacttaatgggatt
ttggcagatgagatgggcttgggaaagactattatgacaattgctctgctagctcaccta
gcatgtgagaaggggatatggggccctcatctcattgttgttccaactagcgtcatgctc
aattgggaaacggagtttcttaaatggtgtcctgctttcaaaatattgacgtattttgga
agtgctaaagagcgaagaataaagaggcaagggtggttaaaaccaaattcttttcatgtt
tgtataacaacttacagacttgttatacaggacgctaaagttttcaagcggaagaagtgg
aaatacttgattttagatgaagctcatctgataaaaaattggaagtcacaaagatggcag
acgcttttgaatttcaactcaaaacggcgcattcttttaactggtacccccttgcagaat
gatcttatggaattatggtctttaatgcatttcttgatgccccacatttttcaatctcat
caagaatttaaggactggtttagtaatcccatatctgggatggttgagggacaagaaaaa
gttaataaagaggttgtcgatcgcttgcacaatgttcttcgaccctttatattacgtcgg
ttgaagagggatgtagagaagcagcttccaatgaagtatgaacatgtcatctattgtaga
ctgtcaaagaggcagcggaacttgtatgaggatttcattgctagctcagagacccaagcc
acccttgctagttcaaatttttttgggatgattagtgtcataatgcaacttcgcaaagtt
tgcaaccatcctgatttatttgaaggccgtccaattgtcagttcctttgatatgactggc
attgatctgcagttaagctcatctgtttgtgcaatgcttacacctcgcccattttccacg
gtggaccttggtgatttagggctttcatttacacatctggataactgcatgtcatcttgg
gagagtgaagatattcaagctattgctaccccctcaagcttgattgagggtcgtgttaac
caagtttgtggagaagttgggcatgcttataagcataagaagtttcatgggatgaacatt
tttgaggagatccagaaggcacttgcgaaggagagacagagagaagcaaaggagcgggca
gcatctattgcttggtggaattctttaaggtgcaggaggaaacctatttactcaacaggt
ttacaggaacttgtcaccataaaaaatcctgtctatgcgattcatgatcagaagtctaat
cccttgtcttactcatattcatcgatgctggctgacattgtactatcacctgttgaacga
tttcataaaatggttgatcaggtggagagtttcatgtttgctatccctgctgcccgtgca
ccaaccccagtttgctggtgcagtaaaggtggaagttctgtgtttattcaaccgactttc
aaggaaagatgcttggaggttctgtctcctcttctcactcctttgcggcctgcagttgtc
cgaaggcaagtctatttccctgatagacgtcttatacagtttgactgtggcaagttgcag
gagcttgcacttttgcttaggcgtctaaaattagaaggtcacagggcattaatttttacc
cagatgacaaagatgcttgatgttttggaggctttcattaacttgtatggttacacatac
atgcgtttagatggctccactcagccagaagagaggcaaacattgatgcagcggttcaac
actaatccaaaaattttcctcttcattttatcaacccgtagtggtggtgtcggcattaac
ttagttggggcagatacagtcatcttttatgatagcgactggaatcctgcaatggatcaa
caggctcaagatcgttgtcatagaataggacagacacgtgaagtacacatatatcggtta
atcagcgagagcaccattgaagaaaatatattaaagaaggcaaatcagaaacgtgttctc
gatgatttggttatccagagtgggggttataacactgaattttttaaaaagctggatcca
atggaactgtttactggccatcaaaaaatttcagtagagaacgtgcaaaaggaggacaac
tgcaatgaaagttctgaggttcctctctctaatgctgatgttgaggcagctctgaaatat
gctgaagatgaagcagactacatggcactgaagaaggttgaacaggaagaggctgtggag
aatcaagaatttactgaagaagctattgggagattggaagaagaagaatttggcaatgag
gaggacctaaagactgatgagcctgctgagcatgatggccaggttacggcatcaaataaa
gacagtgtggcagcattgaatgttgaaggaccagttgaaggtggatccatcacctttgct
ggtaaggaagatgattttgatatgcttgctgatgtcaaagagatggctgcagctgctgct
gcatcaggacaaacaattttgtcctttgagaatcagctacgtccaattgaccgctatgca
atacgctttatggagttgtgggacccaatcatagataagacagcaacacaatcacaagtg
cagtttgaggaaaaggagtgggagctggatcgcattgaaaagttgaaggaagacatggaa
gctgatattgacgatgatgaagaaccttttgtatatgaaagttgggatgctgattttgca
actgaggtatatcgtcagcaagttgaggctttgacccagcatcagttgatggaagaactg
gaagctgaagctaaagagaaggaacttgcagaatatgggtattctgattccgtgagaaat
cagatatcaactgttcgtaaacccaagtcaaagaaaaagacaaagaaagccaagttcaaa
tctctgaagaaaggagctttagcttctgagttcaaagccgttaaggaggagtcagcgatg
gaactgatgtctattgatggagaatctctgtatgatgatgaaatgacttcctctggtgat
gtgtctccgtgtcgaaggctggagaagaaacgtaaacaagcaccatgggttgatgaagag
agaagcacaaagaagtccaagaagtttaagaaggctcctgagatgtgctcctctgtttta
gactccaaaatgctgggaaagctgcagaatgataccaaatattctaggcaatgtgagagt
agagtagttgatgttgaacttaagtctgtgagcaggagtaagatcggaaagaaagtttca
atcatccctatgcctgtgaagcgggttatgaccattagaccagagaaacttaagaagaaa
gggaatatgtggcccaaagattgttttcctgtccctgatttttggtcgcctcaggaggat
gctattctatgtgctgctgtgcatgagtatggtgcaaattggagcttggtgagtgaaatg
ctgtatggtatgtctactggtgggctttatcgtggcaggtaccgatatcctgtccactgt
tgtgagaggttcagggagcttattcaaagatatgttttgactagcactgatcctgtgaac
aatgacaaagccagcaatactggctctgggaagggtcttcttaaagtaactgaggaccat
accaggatgttgctagatgttgcttctcagttttctgatgctgaacctcttattcaaaag
catttttttgcccttctttcttctgtatggaggttctcatctcttaagactaacagacac
aacctggcaccttctcaaaatgcctcctcttcttatcgaaaggcagtcacctctccgttg
aacgtcgtctccagggatttcagtggagaatcgttggagtcgatgaaattcaccaattct
tttgcatgtggtaagttagtagcagctgctctctgtgatgatcacacagctaaaaaggat
gacaatgttcctatctccaagcagagggatgaagcttctgttgtttcagagagactcgat
gttacgctacaattactgggtggtgagcatgatgcaacattaaaccttccatctgttgta
aatctttcaatacttgggcgtgagactccaccatcttcaaaaaccattggacaagaaaag
catctcagagctgcatctagagcttgtcttgaagatagttttggttgggctactttggct
ttccctgttggggatgcaaagtctcgaactccaatgaaagtacaatctctggggaaacac
aagctattagtttctgattcaaataagtcgtccagatcaaaattgagaaagacaactaca
gaatctagtgatgcccgtaatcttgcagctgatccagtactccatccagtattcagtgat
ttctgtgtaaaagatgatgtggtatcaaccagcagcgctgaaattggaatggctgacctt
tgtgtcagttctccctttaacatcaatcctgaacttccaatggcaactgacagctcagat
atggttgcacatgactatgttcctgggttcatttctgggttggatgattatttgatattg
ccagaatttacagatattggctaa
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integrated database retrieval system
