Coffea arabica (coffee): 113692649
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Entry
113692649 CDS
T11342
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113692649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113692649
Enzymes [BR:
carb01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
113692649
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
113692649
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
113692649
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
113692649
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
113692649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
Zeta_toxin
AAA_18
Viral_helicase1
nSTAND3
AAA_29
AAA_16
6PF2K
AAA_17
POT1
MeaB
CPT
AAA
NACHT
Motif
Other DBs
NCBI-GeneID:
113692649
NCBI-ProteinID:
XP_027066918
UniProt:
A0A6P6SM11
LinkDB
All DBs
Position
6c:1704214..1708371
Genome browser
AA seq
802 aa
AA seq
DB search
MEPMDLHPQTASREIAKEEEGAQVKVENGKPVVVIMVGAPGSGKSTFCDHVIRTSARPWV
RICQDTIGNGKAGTKIACIKSASNALEEGKSVFIDRCNMDGEQRGDFLKLGNPEVEKHAV
VLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKEFPKLAEGFTRITFCHNEKDV
EAAMNTYSTLGLLDVLPSGCFGLKNPEAKVQLGIMRFLKKVDIPGKDGLVESNPQHSSDN
QSAVEKDSGSRRPANDSAPSEYVHMDVKNTVSQESGSSIRTNSVYSIPTLAFPSISTADF
QFNLDKASDIIVEKVEEFVSKLGNARLVLVDLSHGSKILSLVKAKAARKSIDSKKFFTFV
GDITRLYSQGGMKCNVIANAANWRLKPGGGGVNAAIFSAAGPALETATKERAESLAPGKA
LVVPLPSTSPLSIKEGVTHVVHVLGPNMNAQRPNCLNNDYVKGCKVLGEAYSSLFEGFAS
ILSTQGWMPKESNEKSLKSQNQIESKHHDGDQKVKREALNECMGGKKSKIFCNELKPNFS
HSVDRKGNIEGRKNVESLNEFERNKNSGGFLKELKPSASHSVDRKENLDGRDDTGMNKAW
GPWAQSLYQFAMHPERHRNDLREILDDVVVLDDLYPKARKHLLVLARVEGLDRLADVSKE
HLPLLNTMHAVGLKWAEKLLNENESLVFRLGYHSEPSMRQLHLHVISQDFDSKHLKNKKH
WNSFNTPFFRDSVDVLQEVSKHGKAIIRDDDSFRSMELRCHRCRSAHPNIPRLKTHISSC
QAPFPGVMLDNGKLVFAPGRIR
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatggaccttcatccccaaaccgcttctcgagagattgcgaaagaagaagag
ggagcgcaagtgaaagtagagaatggaaaaccggtagtggtgatcatggttggggcacct
ggtagcggcaagtctaccttctgcgaccacgttatccggacctctgcccggccctgggtc
cgaatctgccaggacaccattggaaatggcaaagctgggactaaaattgcatgcataaag
agtgcctccaacgcattggaggagggcaaaagcgtatttattgataggtgcaatatggat
ggagagcagcgaggcgattttctgaagctcggtaatcctgaagtagagaagcacgcagtg
gtgcttgatcttcctgcaaagctttgtatatctcggtctgtcaaacgaacaggccatgaa
ggaaatttgcaaggtgggaaagcagctgcagttgtgaataggatgctgcaaaagaaagaa
tttcccaagctggctgaggggttcactcgaattacattttgccacaatgaaaaagatgtt
gaagctgcaatgaatacctatagtacacttggtcttttagacgtccttccatcgggatgt
tttggcctgaaaaacccagaggccaaagttcaactaggtataatgagattcctcaaaaag
gtggatatccctggtaaagatggattggtggaaagtaatcctcagcattcctctgacaat
caaagcgctgtagaaaaagactccggctcgagaagaccagcaaatgattcagctccatct
gaatatgtccatatggacgtgaagaacactgtatcccaggaatcaggctcttccattcgt
accaattctgtatatagtattccaactttagcatttccatctatctctacagctgatttc
cagttcaatcttgacaaggcatctgatattattgttgagaaagttgaagagtttgtgagt
aaattgggcaatgctagacttgttttggtagatttgtctcatggttcaaaaatattatcc
ctggttaaggctaaagctgcacgaaaaagcattgactcgaagaagttcttcacattcgta
ggagatattactcggctttattctcaagggggtatgaaatgcaatgtaattgctaatgct
gctaactggcgcctaaaacctggaggtggaggagtaaatgcggctatatttagtgctgct
ggtcctgcacttgagactgcaaccaaggaaagggctgaatctcttgcacctggaaaagct
ttggttgttcctcttccttcaacttcaccgttgtccattaaggagggggtaacccatgtt
gtacacgtccttggaccaaatatgaatgcacaaagaccaaactgtctcaacaatgactat
gtgaagggctgcaaggttttaggtgaagcttattcatcactttttgaaggttttgcttcc
attctaagcacacaaggctggatgccaaaagaaagcaatgaaaagtcactgaaatcacaa
aatcagattgagagtaaacatcatgatggtgatcagaaggtcaagagagaagctttaaat
gaatgcatgggaggcaaaaaatctaaaatcttctgcaatgaacttaaacctaattttagc
cattctgtggatagaaaaggcaacatagagggcagaaagaatgtcgaatctctgaatgag
tttgaaagaaacaaaaattccgggggctttttgaaggaacttaaacctagtgctagccat
tctgtagatagaaaagaaaacctagacggtagagatgatacaggcatgaataaggcctgg
ggcccatgggctcagtctctttaccagtttgctatgcatccagagaggcacagaaatgat
ttgagagaaattttggatgatgttgtggtgctcgatgatctttatccaaaggcacgcaag
catctgttggtattggcacgagttgaaggtcttgatcgtcttgcagatgtaagcaaagag
catcttcctctattaaacacaatgcatgctgttggcttgaagtgggcagaaaagttgctg
aacgagaatgaatcattagtattccgtctgggttatcactcggagccttcaatgagacaa
ttgcacctccatgttattagccaagattttgattcaaaacatctcaaaaacaagaagcat
tggaactcattcaacactcctttcttccgagattctgttgacgtactgcaggaagtaagt
aaacacggtaaggccataataagagatgatgacagcttccgctctatggagttgcgttgc
catagatgtcggagtgcacatccaaacataccccgcctaaaaacgcatattagctcttgt
caagcaccattcccgggggttatgcttgacaacggtaagctagtgtttgctccaggtaga
attagatag
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integrated database retrieval system
