Coffea arabica (coffee): 113692738
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Entry
113692738 CDS
T11342
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113692738
03420 Nucleotide excision repair
113692738
03430 Mismatch repair
113692738
03440 Homologous recombination
113692738
03460 Fanconi anemia pathway
113692738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113692738
03032 DNA replication proteins [BR:
carb03032
]
113692738
03400 DNA repair and recombination proteins [BR:
carb03400
]
113692738
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113692738
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113692738
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113692738
MMR (mismatch excision repair)
113692738
DSBR (double strand breaks repair)
HR (homologous recombination)
113692738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
113692738
NCBI-ProteinID:
XP_027067062
UniProt:
A0A6P6SMF2
LinkDB
All DBs
Position
6c:complement(10850014..10853862)
Genome browser
AA seq
641 aa
AA seq
DB search
MPVNLTQNAVSAITAGDVNSKPLVQVLDIKLIGSTQERYRLLISDSVLTQHAMLATQLND
LVKSGRIRKGTVVQLIDYICSTVQNRKIIVILNMETIIPDCDIIGNPKMIGDLDTGVQRS
VPDRNNGSATLTNNNNLGTQNSGRSNFSNSNNLISRNSGSNNVQSFRPTVQPAYLPPPIY
KNHGAIVKNEAPARIVPIAALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDS
DGGEIRVTCFNAVVDRFYDIIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLDTSSTVDL
CPDEDASIPQQQFSFRPISDIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRILNL
KDRSGRSVELTLWGDFCNREGQKLREMVEAGHFPVLAVKAGKVNDFTGKSVGTISSTQLF
IDPDFSEAHVLRDWFDGGGKDVASQSISREIMPGGLKNEIRKTVSQIRDEGLGRSDKPDW
ITVKATISFIKTDTFCYTACPLMIGERQCNKKVARSGNSRWLCDRCNQEFEECDYRYLLQ
TQIQDHTGLTWVTAFQESGEEILGCSAKDLYLLKYEEENELRFAEMIKSCLFTQFMFRLK
IKEELYGDEQRVKITVVKAEKVNSSTECRYLLEQISKFSFR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacctgacgcagaatgccgtctcggctataaccgccggcgacgtgaactcg
aagccgcttgtacaggttctggatattaagctcattggctccactcaggaacggtaccgc
cttttgatctccgattcggttctgactcagcacgcgatgctcgccactcagctcaacgac
ttggtcaagtcaggccgcatccgcaagggtaccgtcgttcagttgattgactatatctgc
agcaccgtccagaatcgcaagataatagttatcctaaatatggaaactataattccggat
tgtgacataattgggaacccaaaaatgattggcgacttggatacaggggttcaaagatca
gtgcctgataggaataacgggtctgctacattgactaacaataacaatttgggtactcaa
aactctgggcgttcaaacttctcaaacagcaataatttgatctctcgtaattcagggagc
aataatgtacagagtttcaggccaacagttcaacccgcatacctacctcctccaatttac
aaaaaccatggtgctatcgtaaaaaatgaagccccagcacgcattgttccaattgcagca
ttgaatccttatcagggtcgttgggctgttaaggcaagagtgactgcaaaaggagatctt
cgtcgctacaacaatgccaggggagacggaaaggtcttttcttttgatcttcttgattct
gatggaggggaaatacgagttacctgtttcaatgccgttgttgaccgattttatgatatt
attgaagttgggaaagtttacatgatatcaaaaggtagcttaaaaccagctcaaaagaac
ttcaaccatttgaagaatgaatgggaaatatttttggacacgagttcaactgtagatctt
tgcccagatgaagatgcttcaataccacaacagcagttctcattcaggcctattagtgat
attgaaaatgttgagaataattccatattggatgttattggtatagtaattagtgttaat
ccttctgttcctatcttgagaaagaatggaatggaaacacagaggagaatcctgaattta
aaggataggtctggaaggagtgttgagttaactctctggggagacttctgcaaccgggaa
ggccaaaagctacgggaaatggtagaagctgggcatttccctgttttagctgtcaaagct
ggaaaagttaatgacttcactgggaaatcagtggggactatttcttccactcagctgttc
atagaccctgatttttcagaggctcacgtcttaagggactggtttgatggaggaggaaaa
gatgttgcttcccagtccatatctagggaaattatgcctggaggattgaagaatgaaata
cgtaaaactgtgtctcagatcagagatgaaggccttggaagatcagataaaccagattgg
atcactgtcaaggccacaatatctttcataaagactgacactttttgctatacagcttgt
ccactaatgattggggaaagacagtgcaataagaaagtagcgaggtcgggaaactctaga
tggctatgtgacagatgcaatcaagaatttgaggaatgtgattacagatatcttcttcaa
acccaaattcaggatcatacggggctgacatgggtgactgctttccaggaatctggtgag
gagatattgggttgttcagcaaaggatttgtacttgttaaagtatgaagaagaaaatgag
ttgagattcgctgagatgattaagagctgtctgtttacacaatttatgttcaggctaaaa
atcaaagaggaattatatggtgatgaacagagagtgaaaattacagttgtcaaggctgag
aaggtgaatagctctacagaatgcagatatctacttgaacaaatttctaaattttctttc
cgttga
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