Coffea arabica (coffee): 113692745
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Entry
113692745 CDS
T11342
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113692745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113692745
03019 Messenger RNA biogenesis [BR:
carb03019
]
113692745
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113692745
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113692745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
113692745
NCBI-ProteinID:
XP_027067071
UniProt:
A0A6P6SMG1
LinkDB
All DBs
Position
6c
Genome browser
AA seq
1054 aa
AA seq
DB search
MDMESSGRPFDRSRDLGLKKRRLTQDPIPLDRTSNGRSNSSFIQQQRPALPSANSTSVAA
GSRFRVSDRGGADSESSDSVRGPYPQQHLQQQQQILELVNQYKTALSELTFNSKPIITNL
TIIAGENLHAAKAIAATVCANILEVPREQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVF
CKAYRQVDPAIHPGMRHLFGTWKGVFPSPTLQMIEKDLGFVPATNGSSLGTSSRPDAPAA
RPAHSIHVNPKYLEARHRLDLSTRAKGSASDIGGNLLNSSEERLERTPSVGSGRPWVDPT
LKNIQHPQREQLSDAPFDDSEYDSLMLKRSGIAIGGAGEKFKEQVFDKTWFESGGVMPAD
QGNGFDVKHGFPRYPALRSVSSANMQPRPIFPSKSTSGMTKSWKNSEEEEYMWDDINSRA
TDQSAINSSGRDRWTPDDSERTSEASADSLSTEQKGQAAIGHRIATSWSQDPVLSEGTSH
LPSSRIMNNSGSYPTSLSGLATAASAVGRPLFHSKIGPGGGGTPGYSFSSATLGPMGSIG
QPRQTLGAASPSAQSPMHQRPSSPSFLVRGANQVAHNLAERDQKPALPPAECRASQYPGH
LNLGANSQPLPSRNAHLANLERQQPPSICALSSVASPHSLLSESIRQTSTSSLPEISGLD
LSSVSKNPFSKDTNAVATQSSTSSLLAAVMKSGILGGNLVSGSVPSLSSQDAGVAATEAS
KQPTLTSHPSTHSTMVGPRISPASVLSQSSNENTPKSSIQRNGGQLPVPPETLPSSIVGS
ALAQPLNAANAVSAPVSSLLSSLVEKGLISASKTESVTSLMPDAPGQSQNQSLEIASTSS
SPISLPLCSSSTKQELPISELTSKAKDVLPESSAAEMKNLIGFQFKPDVLREFHPAVISE
LLEDLLFKCSICGLRLKIEEQLNRHLEWHALRDKDKNNLNKESREWYLKSVEWIAGNAGI
VSNNESAGVLEGPSKRSECNEQMVPADESQCLCVLCGELFEDFYSEERDQWMFKGASYAN
VTGITNEGASQDTIVHANCLAKSSLDLDCATNIK
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagagttcaggtagaccgtttgatagatctcgagacctagggttgaagaag
cgtaggcttacccaggacccaatcccgctggatcgcacctccaatggccgctccaacagc
tccttcattcagcagcagcgccccgcgctgccgtctgcaaattcgacctccgttgctgct
ggttccagatttcgggtgagcgataggggcggcgctgattccgagagcagtgactcggtg
cggggaccttatccacaacagcacttgcagcagcaacaacagattctggagcttgtgaat
cagtacaagacggccttatctgaactgactttcaattccaagccgattattaccaacttg
actattattgctggggaaaatctccatgctgccaaggccatagcggctactgtctgcgcc
aatatcctcgaggttcctcgtgagcaaaagctcccatctctttatcttttagacagtatt
gtgaagaatattggaagggattacatcaaatactttgcttccaggttacctgaggttttc
tgcaaggcatatagacaggttgatcctgcaatacatcctggcatgaggcatctttttggc
acttggaaaggagtatttccttctccaacacttcagatgattgagaaggatcttggattt
gtacctgctactaatggttcttctttaggaacatcatctaggcctgatgctcctgctgct
cgccctgcacatagcatccatgtgaaccccaagtatttggaggctagacaccgtcttgat
ctgtctactagggccaaaggttctgccagtgatattggtggaaacctgttaaactcatct
gaggaaagacttgaaagaactccaagtgttggctctggaagaccatgggttgatcctact
cttaagaatattcagcatcctcaaagagaacaactgagtgatgccccatttgatgactct
gaatatgattctttgatgttgaagcgatcgggcattgcaattggaggagcaggtgaaaag
ttcaaagagcaggtatttgataagacatggtttgaatctggaggtgtcatgccggctgac
caagggaatggttttgatgttaagcatgggtttccaaggtatccagctctgaggtctgta
agttctgcaaatatgcaacccagacccatctttcctagtaaaagcaccagtgggatgact
aagagctggaagaactctgaggaagaggagtacatgtgggatgatattaactcaagagcc
actgatcaaagtgcaatcaatagctctggaagagatcgttggacgcctgatgattctgaa
agaactagtgaagcttcagctgattctctatccactgaacagaaaggccaagctgctatt
ggacatcgaatagcaacatcatggtcccaggacccggtcctgtcagaagggactagtcat
ttgccttcttccagaatcatgaataattctggaagctatccaacatctctcagtgggttg
gcaactgctgctagtgctgtaggtaggcctcttttccattcgaaaatagggcctggtggt
ggcggaacaccaggctatagtttctcaagtgcaacattggggcccatgggatccatagga
caaccacgacagactctgggagctgcatcaccctctgcacagtcccccatgcatcagcgt
ccttcttcaccttcctttttagtacgtggagccaatcaagtagctcacaatttagctgag
cgtgaccaaaaaccagccttgcctccggcagagtgtagagcttctcaatatccaggacac
cttaatcttggggccaattctcagccattgccatcccggaatgcccatcttgctaatttg
gagagacagcagccaccaagtatttgtgctttgtcttctgtagcatctcctcattctcta
ttgtctgaatctattcgtcaaacatcgacatcatcgttgcccgaaatttcaggtttagat
ctctcctcagtgtcaaaaaatccattttccaaagataccaatgcggtggctacacaatca
agcactagtagtttgttggcagctgttatgaaaagcggaatacttggtggtaatcttgtt
agtggaagcgtaccttctctaagttctcaggatgctggagttgcggcaactgaggcaagc
aagcagcctactctaactagtcatccttcaacccactctacaatggtggggcccaggatt
tcacctgcttctgttttgagtcagtcatcgaatgaaaacacgccaaaatcctcaattcag
agaaatggtggccaactaccagtgcctcctgagacacttccttcctctatcgtcggtagt
gccttggcacagcccttgaatgcagctaatgctgtctctgctccagtttctagtcttttg
agttcacttgttgagaagggattgatatctgcatcaaagaccgagtcagtaacttctctt
atgccagatgcacctggtcaatctcagaaccagagtcttgaaattgcaagcacaagttca
tctccaatttccttaccactttgttcctcatctaccaaacaggagctgcctatttctgag
cttacgtcaaaagccaaggacgtgttgcccgagtccagtgcagctgaaatgaaaaatctt
attggttttcaatttaagccagatgtgcttagggaattccatccagctgtgatcagtgaa
cttctcgaggatcttttgtttaagtgtagcatatgtggtcttcggctcaaaattgaggag
caactcaacagacacttggagtggcatgctttgcgagacaaagataagaacaatttgaat
aaggaatcaagagaatggtatttgaaatcagttgagtggatagcaggtaatgctggtatt
gtgtctaataatgaatcagcaggggttttggaaggtcccagcaagagatcagaatgtaat
gagcagatggttcctgctgatgaaagccaatgtttatgtgtgttgtgcggtgagctcttt
gaagatttttacagtgaggaaagagaccaatggatgttcaaaggagctagctatgccaat
gtcactggaattacaaatgagggagcatctcaggacactatagtccatgcaaactgctta
gcaaaaagttctcttgatttggattgtgccacgaacatcaagtag
DBGET
integrated database retrieval system
