Coffea arabica (coffee): 113693652
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Entry
113693652 CDS
T11342
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein
KO
K08518
syntaxin-binding protein 5
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113693652
Membrane trafficking [BR:
carb04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
113693652
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
113693652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_WDHD1_1st
WDR55
Beta-prop_VPS8
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_HPS5
Synaptobrevin
Beta-prop_IFT140_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR5
Beta-prop_WDR36-Utp21_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
113693652
NCBI-ProteinID:
XP_071907960
UniProt:
A0ABM4UKZ9
LinkDB
All DBs
Position
6c:1816746..1830017
Genome browser
AA seq
1135 aa
AA seq
DB search
MLAKRLFQKAAALHRHHNPPPPHNAGSCLTPEDVDFRINVHHGIPSTASILAFDPIQNLL
AVGTLDGRIKLIGGDNIEGLLISPEQHAYKYLEFIHNEGSLISITIDNSIQVWNLKSRCL
ACSLCWESNITAFSIISSSNLMYVGDEYGVISVVKYDAENAELLHLPYHIPSEAVGFSVP
FHQPVVGVLPQPCSSGTRVLIAYQSGLIILWDVLEAQIVIVRGNKVLWLKNEVDNPSNGD
LGLPRDASHELEEKEITALCWASCDGSILAVGYIDGDILFWKTSTSVPGKCQQSGLSEQV
VKLQLSSAEKRLPVIVLHWWANYKSHRDSDGQLLIYGGDEIGSEEVLTVLSVEWSSGMGT
IQCLSRVDLSLSGPFADVVITAGTLRSAKTASLFVLTNPGHLQIFEVADSSASESQQEKK
LSVSAVDIPPVVPTINPLITVANLFCLPMDEDSSKALAEIFRIRKSSSRKKLSGGTSFPL
TGGICPHLSSDKDYRIWRVYVAGYHDGSVRIWDATYPVLSSLCVLQNEIRGTNAAISIAS
VSKLEFCIHTLRLAVGDECGLVRIYDLHSSKETHFHFVTETKNEVEQLAQDEGPICRAAF
NIIDSQVQALKFTNSGAKLAAGYECGRIAVLDMNSFSTLFLADTVSCPISMMSVICDIVI
HQVGSSYRSGSNANDQTKNLMVILTKDGAVYTIDADNGHLISSRPMRLSKDRTAVSMHVI
GKXNLXXWYQVAHALGWTYYTRILLVFSESCSRESSTSFGMKKEHACKDEMVTNEPTQDI
STNRNDKSETENQSSDDKSSHHLEDLLVLLCCKDMLHLCTAKHIVQGDKKPIYKVKLTKP
CCWTTIFVKDDRVCGLILLYQTGEIEIRSIPYLELVKETSLASLLRWNFKANMEKTMSST
ETGHLTLVNGSELVFLSILLSENDYRIPDSLPSLHDEVLAAATRAAITYSLKHKKKPGGG
PRILSGIVKGFKREKLNQAMELACITEPCSSHLEDVFVRNLTPDPSAMSKDYQDAAELNI
DDIEIDEPVHLAPTSSHEVQYDNREGRKDREKLFNEDSSDMKPRLRTREEILATYRKAGD
ASSVAEQARNKLLERQEKLQRISKQTEDLRNGAEDFASLANELVKVMENRKWWQI
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgttggcaaaacgcctatttcagaaggccgcagcgcttcatcgccatcataatcccccg
cctccgcacaacgcaggcagttgtcttacaccggaggatgtggatttccgcatcaatgta
catcatggtatcccgtcgacagcatccattctcgcttttgatcctattcagaatttattg
gcggttgggacattggatggtaggataaaattgattggtggtgataatatagaaggcctc
ttgatttctcccgagcaacatgcatacaaatatttggagtttattcacaatgaaggttct
ttgatcagcataactattgataacagtattcaggtatggaatctgaaaagtaggtgtcta
gcatgcagtttatgctgggaatcaaatataactgctttctcaataatcagcagctccaat
cttatgtatgttggagatgaatatggagtaatctctgttgtgaagtatgatgcagaaaat
gctgagcttttgcacttgccatatcatataccttcagaggcagttggattttcagttccc
tttcatcaacctgtagttggagttcttccccaaccttgttcttctggaactagagtatta
attgcctatcagagtggattaattattctttgggatgttcttgaagctcagattgtcatt
gttagaggtaataaggttctgtggttgaagaatgaagttgacaatccaagtaatggagat
ttgggccttccacgtgatgcatctcatgaattagaggagaaagagataactgctctttgt
tgggcatcctgtgacggatccattcttgctgttggatatatagatggagatatcttgttt
tggaaaacgtcgacttctgtccctggtaaatgccaacaatctggattatcagagcaggtg
gttaagctgcaattatcatctgctgaaaagaggcttccagtgatagtgttgcactggtgg
gcaaattacaagtctcaccgagacagtgatggtcaactacttatttatggcggtgacgag
ataggatctgaggaggttctgacggttctcagtgttgagtggtcatctggaatggggact
atccaatgtcttagtcgtgtggacctctctctttctggtccctttgcagatgtagtaata
accgctgggaccttgaggagtgcgaaaactgcttctctatttgtattgacaaaccctggg
cacctacaaatatttgaagttgctgactcatctgcctcagagtcacagcaggaaaagaaa
ttatctgtttctgctgtagatatccctccagtagtaccgacaataaatcctctcataact
gtggctaatctcttctgtttacccatggatgaagactcatcgaaggctctcgctgagata
ttcagaattaggaaatctagttcaagaaagaagttgtctggaggcacaagcttccctttg
actggaggcatatgccctcatttatcatctgacaaagattaccggatttggagagtatat
gtagctggttatcacgatggatctgttcgtatatgggatgccacttatccagttctgtca
tccttatgtgtattgcaaaatgagattaggggcacaaatgcagctatttcaattgcttca
gtatcaaaattggagttttgcatccatactcttagattagctgttggtgatgaatgtggt
ctggtccggatatacgatttgcatagcagcaaagaaacacacttccattttgttacagag
actaaaaatgaagttgaacagttggctcaggatgaaggacccatttgcagagctgcattt
aatattattgattcccaagttcaagcattaaaatttacaaactcaggggccaaacttgca
gccggatatgaatgtggtcgtattgcagtgcttgatatgaattccttctcaaccttgttt
ttagctgacacagtatcctgcccaatctccatgatgtcagtaatttgcgacatagtcata
caccaagttggtagttcataccgatctgggtcaaatgcaaatgatcaaactaagaatcta
atggtaattttaacgaaggatggagcagtttatacaattgatgctgataatggccactta
atcagctctcgaccaatgcgcttgagcaaagatagaactgcagtttctatgcatgttata
ggcaagtgaaacctttgatagtggtatcaagttgctcacgctctggggtggacttattat
actagaattttgttggtcttttcagaaagctgtagcagagagtccagtacatcatttgga
atgaagaaggaacatgcttgcaaggatgaaatggtcactaatgaacctactcaggacatc
agtacgaatagaaatgacaaatctgagactgaaaatcagtcttcagatgataagtcctcc
caccatttagaggatttgctggttttgctttgttgcaaggatatgttgcatttatgtact
gcaaagcatattgttcagggagacaaaaaacccatttacaaagtcaagctgacaaagcct
tgttgttggacaacgatttttgtgaaagatgatagagtttgtggactgattctgctctat
caaacaggagaaattgagatcagatctataccctatttagaactagtgaaagagacctct
ttggcctcacttttgaggtggaatttcaaggcaaatatggagaagacaatgagttccaca
gaaactgggcatcttacactggtaaatgggtctgagctggtgttcctttccatattgctg
agtgaaaatgattacaggattccagattctttgccttctctccatgatgaagtgcttgca
gctgcaaccagggctgctattacgtattctttgaagcataagaaaaaaccaggtggtggc
cccagaattctcagtggtattgtcaaaggttttaagagagaaaaactaaaccaagcaatg
gaacttgcttgtattactgaaccttgttcaagtcatttagaagacgtctttgtgaggaat
ctaacccccgatccatcagcaatgtctaaagattatcaggatgctgctgaacttaatata
gatgacatagaaattgatgaacctgtgcatctggcacctacttcatctcatgaagtgcaa
tatgacaatagagaaggtagaaaggatcgagagaagttgtttaatgaggacagcagtgac
atgaaaccgagacttagaactcgagaagaaattttagcaacatacagaaaagctggggat
gcttcatcagtggctgaacaagcaagaaacaaacttttggaacgccaggaaaaacttcag
aggatcagtaaacaaacagaggatctgcgaaatggagctgaagactttgcatctttagct
aatgagcttgtaaaagtaatggaaaacaggaaatggtggcagatatga
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integrated database retrieval system
