Coffea arabica (coffee): 113693775
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Entry
113693775 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP93A isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113693775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113693775
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113693775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_14
TPR_2
TPR_12
PrmA
TPR_1
Motif
Other DBs
NCBI-GeneID:
113693775
NCBI-ProteinID:
XP_027068260
UniProt:
A0A6P6SR24
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Position
6c:complement(17763628..17774104)
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AA seq
863 aa
AA seq
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MASDADMGSWNDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALSKKLKAKTLRTEAPSQS
IAATRLLAREGINAEQLARDLKSFELKTTYEDVFPAEATTVEEYLQQVHEMAMVSAVQEA
QKDNLRSFSDYMMTVLEEDWQKEKRDFLQSLGRISRLPRINVMDSGTGSVRQGQIGTLTS
SPHVSSGPSTMELAPLANKPIVEKKAAAYGEVVKDLNSARERGSSFKPATAFKLAYESLG
IDTSGGKSVGMQKMWNLVLTLMNEDSTPKPNVSRKLSLVMGARRHLEWGHEKYVLDTIQS
HPAQASLGGAVDNLQRIRAFLRIRLRDYGVLDFDADDARRQPPIDTTWQQIYFCLRTGYY
DKAQEVAQSSRVAHHFAPLLTEWIASGSLVSPRTVAAASEECEKLLRSGDRVGRASYDKK
KLVLYAIISGSRRLIDRLLREQPTLFNTIEDFLWFKLSAIHEWSDGSSSAVLNEGFSPYT
LEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKDIGDEGYGIDSVHIN
IVFADHEVLSEGAGAAQKFGVMDACAEASSIIRQYGSAYLRNGDLSMALEYYAQAAAAVG
GGELSWTGRGSIDQQRQRTLMLKQLFTELLLHDGGIYLLLGPRGTGEEGQLGRFFTDGKT
RQQFLLEAARQCQDTGLYDKSIEIQKRVGAFSGALETVNKCLSEAICALSLGRLDGESRT
SGLIHSGNDILEAFKYHPEISPQERENVMEQQTVLRQLEAILCVHKLARVGHYLDALREV
AKLPFLPLDPRAPDFASDVFNNLSPYVQTCVPDLLRVALHCLDNVKDTDGSLRALRTKIA
NFLANNVNRNWPSDLYEKVARSL
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgcagacatgggtagctggaatgatcttctccactcgtcctcgaagcta
ctcgaacaagccgctccttccgcccagttccctcctcttcagaggaatttggaccagtta
gaagcattgtcaaagaagctcaaggcaaaaaccctaagaactgaagctccctcacaatct
attgccgcgactaggttattagcgcgagaggggataaatgcagagcaacttgcgcgcgat
ctcaagtcatttgagctaaagacaacatatgaagatgttttccctgcagaagcaacaaca
gttgaagaatatttacaacaggtccatgagatggcaatggtgtcagctgtacaggaagct
cagaaggataatcttagaagtttcagcgactacatgatgacagttttggaggaggactgg
caaaaagaaaaaagagacttcctccaaagtctgggtcggatttcgaggttgcccagaatc
aatgtgatggattcaggcactggttctgttcgtcaaggtcaaatagggacactaacttcc
agtcctcatgtttcatctggtccatctaccatggagcttgcaccgttggctaataagccc
attgttgagaaaaaagctgcagcctatggagaagttgtgaaggacctcaacagtgccaga
gagcgtggttcttctttcaagcctgctacagctttcaagcttgcatatgagagtttaggc
attgatacatctggaggcaaatcagttggcatgcagaaaatgtggaaccttgttttgaca
ctgatgaatgaggattcaactccaaaaccaaatgtttcaaggaaactatcattggtaatg
ggagctagacgccaccttgaatgggggcatgaaaaatatgtcctagatacaatacagagt
catcctgcacaggcttctcttggtggagctgttgataatttgcagcgaattcgagccttc
ctgaggattcgtttaagggattatggtgtccttgactttgatgcggatgatgctcgtaga
cagcctcccattgataccacttggcagcagatatacttttgcttgagaactgggtactat
gataaagcgcaagaagttgcccaatcatctcgtgttgcacaccactttgctcctctgctc
actgagtggattgcctctggcagtctcgtatcgcctaggaccgtggctgctgcctctgaa
gagtgtgaaaaattgttgaggagtggtgatagagttggccgagcttcatatgacaagaaa
aaattagttctgtatgccatcatatctggttctcgcaggctgatagacagactgcttaga
gagcaacccacacttttcaataccatagaggatttcttgtggttcaagttgtctgctata
catgaatggtctgatggttcatcttctgctgttcttaatgagggattctcaccctacact
ttggaagatttacaggcttacctaaataagtttgaaccttcatattatacaaagaatgga
aaggatcctctggtgtatccatatgttttattgttgagcattcagctgcttccagcagtc
ctttatttgtccaaggatataggagatgaaggatatggcattgattctgtccacataaat
atagtattcgctgaccatgaggtcctttctgaaggtgctggggctgctcaaaaatttgga
gtgatggatgcttgtgcagaggcttctagcataattaggcagtatggatctgcttatcta
cggaacggtgacctgtcaatggcactagagtactatgcacaggctgctgctgcagtgggt
ggtggtgagctttcatggactggaagaggtagtatagatcagcagcggcagaggaccttg
atgttgaagcaactttttacagaacttttattacatgatggtggtatttatcttctgctc
ggaccaagaggtactggagaagaaggtcaacttggcagatttttcactgatggaaagaca
aggcaacagtttctgcttgaggctgcgcggcagtgtcaggatactgggctgtatgacaaa
tccatagagattcaaaagagagttggggcattctctggagctctggagacagtcaacaag
tgcctgtctgaagcaatttgtgccctatcacttggtagattggacggtgagagcaggact
tctgggctcattcattccggaaatgatattttggaggcatttaagtatcatccagagatc
agtcctcaggagcgagagaatgttatggaacagcaaactgtgttaagacagcttgaggca
atcttgtgtgttcataagcttgcgagggtgggacattatttagatgctttgagggaggta
gcaaaacttccatttcttcctcttgatccccgagcaccggattttgcctctgacgtattt
aataatctatccccttatgtccaaacttgtgtgcctgaccttctaagagttgctcttcat
tgtttggacaatgtcaaagatacagatggttcgcttcgtgccttgagaacgaagatagca
aacttccttgcaaataacgtgaacaggaactggcctagtgacttgtatgaaaaggtcgcc
cgaagcttgtaa
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