Coffea arabica (coffee): 113693885
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Entry
113693885 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113693885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113693885
03009 Ribosome biogenesis [BR:
carb03009
]
113693885
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113693885
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113693885
Complex B
113693885
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113693885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113693885
NCBI-ProteinID:
XP_027068447
UniProt:
A0A6P6SRE2
LinkDB
All DBs
Position
6c:17797515..17804615
Genome browser
AA seq
1154 aa
AA seq
DB search
MATAEAAPASLGPRYAPEDPTLPQPWKGLIDGSTGVLYYWNPETNVTQYEKPTAVAPPLP
PGPPPSASTPTLAPIPGARTTQASEVQNQQMQAQQQVQQVNPHLQQQQQQQALISPHIVQ
RHSSQIPPTGQQQGSQLVPSVEQQGQLTPQHLRPQMLQYVGQSTPSQSGQVQVPPGSHAP
QQPMQQMGQQTLMYQGPPGGNPQTHQFPHQQTQYMPYQQNVLQHGHQNSQQQTLQRHHFS
HQQDHKMGFPPREDIDSQQGKQVGHSPAQIQSSASSSIQNLPAGSSSMQAPQMGVQPNQA
TQFGGSSVNMQQPASLLQLQQGAMDLLQPQHGSRFQNQMGPSMMHAQQPKGPPFGPNVGY
DGSPLGRAGNDLYYNSNKDGHVMAPQQPKLAAIPMARNNQEMRRGDVHLQNVVPSHPGGL
SGVTGPPMHDLYGHATGGPLFPNDSFTRPPPGIIGPSDANATHLSPADVYRQKHEVTATG
DNVPAPFMTFEATGFPPEILREIQLAGFSFPTPIQAQTWPIALQSRDIVAIAKTGSGKTL
GYLIPAFMHLRRLHNNPQYGPTVLVLAPTRELATQIQDEAIKFGRSSRVTCTCLYGGASK
GPQLKELERGADIVVATPGRLNDILDSKRIDFRQVSFLVLDEADRMLDMGFEPQIRKIVN
EIPPRRQTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKQ
RRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRNFGAAAIHGDKNQGERDWVLNQFRS
GKTPILVATDVAARGLDIRDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQD
WKYAADLVKVLEGADQQVPPEVKDMALRGAPSFSRDRGGINRFDSADVDGGGGRWESGGH
GGMRDFGSGGRGGMRDSGFGGRGGMRDGGFGGRGGMRDGGFGGRGGFGNRGGMRYGSFGG
RGGRDGGFGGGGGGPGGWDRNDRYSMDGRGRGRGRGRGRFDNRREIGDRSRGRSYSSSPE
RVRTWGYSRSRSRSKSRSRSRSRSYSRSHSRSRSWSRSYSPRRSRSRSPSYERYERRRRK
TKFDQMDVNVPNADVPSESGMSPMSPGRQGNGFSGSGAMPAPAPAPAVQVPFISSTDPGT
TGSHPTNPGIDPEV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctgaggcagcaccagcgtcactagggccacgctatgctcccgaagatcct
actctgccgcaaccttggaagggattaattgatggtagcacgggtgttttatactactgg
aatcctgaaactaatgttacgcaatatgaaaagcctactgctgttgctcctccattgccc
cccggtccacctccttcagcttctacccctactttggctccaattccaggcgctaggact
acccaagcaagtgaagtccaaaaccagcaaatgcaggcccaacaacaagtacaacaagtg
aatcctcatttgcagcagcagcagcagcaacaagcactgatatcacctcatattgttcaa
cggcatagctcgcaaataccaccaactgggcagcaacagggttcacagttggttccttct
gtggaacaacaggggcagctaacaccacagcaccttaggccacagatgttgcaatatgtt
ggtcaatcaacgccatcgcagtcgggacaagtacaggtccctcctggatcacatgctcca
caacaaccaatgcaacaaatgggccagcaaactctcatgtatcaaggtccacccggaggg
aatccacagacccatcagtttccccaccaacagactcagtatatgccatatcaacagaat
gtacttcagcacggacatcaaaattcacagcaacagactctccaaaggcaccacttttcc
catcaacaggatcacaagatggggttcccacctcgggaggatattgattcacaacaagga
aagcaagtgggacattcacctgcacagattcagtctagtgcttcatcctcaattcaaaat
cttcctgctggtagtagttccatgcaggcacctcagatgggtgttcaacctaatcaagct
acgcagtttggtggctcctcagtcaacatgcagcagcctgcatctttattacagttgcag
cagggtgcaatggatttgcttcaacctcagcatggctcgaggtttcagaatcagatgggc
ccctcaatgatgcatgcccaacagccaaagggacccccatttggaccaaatgtgggctat
gatggaagccctcttggaagagctggaaatgatttgtattataactctaacaaggatggc
cacgtgatggctcctcagcagcccaagcttgctgcaataccaatggcaagaaataatcag
gagatgaggaggggggatgttcaccttcaaaatgtcgtaccaagtcatcctgggggactg
agtggtgtaactgggccacctatgcatgacttatatggtcatgcaactggtggtccacta
tttccaaacgattctttcacaaggcctcctccaggcattataggaccctcagatgctaat
gcaactcatctctcgcctgctgatgtttatcgccaaaagcatgaagtaacagcaacgggg
gacaatgttcctgctccattcatgacttttgaggccactggtttcccaccagaaatactg
agggagatacagttggctggtttctcttttcccacaccaattcaggcgcaaacttggcca
attgctttacaaagcagggacatagttgcaattgcaaagacaggttctgggaaaacattg
ggatacttaatccctgcattcatgcatctcagaagactccacaacaatccccagtatggc
cccactgtgttggttttagctccaactcgtgagcttgccacacaaatacaggatgaagct
atcaagtttggtcgatcttccagagttacttgcacatgcctgtatggcggtgcttccaaa
ggccctcagctaaaagaactggagaggggagcagatattgttgttgccactcctggtcgg
ttgaatgacattcttgatagcaagaggattgattttcggcaggtctcttttcttgtgctt
gatgaagctgatcgaatgcttgacatgggttttgaacctcagattcgcaagattgttaat
gaaataccaccacggagacaaacactcatgtacactgctacttggcctaaagaagtgaga
aaaatagcgaatgatcttcttgttaatccagtacaggtgaacattgggagtgtagatgaa
cttgctgccaataagtccatcacacagtatgttgaagtggtccctcaaatggagaagcag
agacgcttggagcaaattcttagatcccaagaacggggttccaaaattatcatcttctgt
tcaacaaaaaagttgtgtgatcagctggcacgtagtattggtcgcaactttggggctgct
gcaattcatggagacaagaatcagggcgagagggattgggttctgaatcaatttcgatct
gggaagaccccaatcttagtggccactgatgttgcagcacgtgggcttgatatccgagac
ataagggttgtcatcaattatgacttcccaacgggcattgaagattacgttcaccgcatt
ggaagaactggcagggctggtgctacaggtgtgtcttacacctttttctctgagcaggat
tggaaatatgctgcggatctagttaaagtattggagggggcagatcagcaagtaccgcca
gaagtaaaagatatggctttacgaggtgcaccaagcttcagcagggatcgaggtgggata
aatcgttttgattctgctgatgttgatggtggtggtggacgttgggaatctggtggccat
ggtgggatgagggattttggctctggtggccgaggtgggatgagggatagtggctttggt
ggccgtggagggatgagggatggtggctttggcggtcgtggtgggatgagggatggtggc
tttggtggccgtggtggctttggcaaccgtggtgggatgaggtacggtagttttggtggc
cgtggagggagagacggtggatttggtggtggtggtggtggccctggtggttgggatagg
aatgatcgttatagcatggatgggcgagggcgtggtaggggacgtggacggggccgattt
gataatagaagagagattggagatagaagtagaggcagaagctacagctccagtcctgag
agggtacgaacgtggggttatagcaggagcaggagcaggagcaagagccgaagccgaagc
aggagtaggagttacagtcggagccacagtaggagtagaagctggtcacgcagctatagc
ccaaggcgcagccgaagccgcagccccagctatgagagatatgagaggcggcgacgcaaa
actaagtttgatcagatggatgtgaacgttccaaatgctgatgttccttccgagtcaggt
atgtctcccatgtctccaggcagacagggcaacggattttctgggtctggggctatgcct
gcgcctgcgcctgcgcctgctgtgcaagtaccttttatttcaagcactgatcctggcacc
actggatctcatcctaccaatccaggcatcgatccagaggtttga
DBGET
integrated database retrieval system
