Coffea arabica (coffee): 113693996
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Entry
113693996 CDS
T11342
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
carb03016
]
113693996
Enzymes [BR:
carb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
113693996
Transfer RNA biogenesis [BR:
carb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
113693996
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GFIT
Motif
Pfam:
RNB
WHD_RNase_II
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
B2
Motif
Other DBs
NCBI-GeneID:
113693996
NCBI-ProteinID:
XP_071908094
UniProt:
A0ABM4ULE5
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Position
6c:2868519..2876122
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AA seq
795 aa
AA seq
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MAVRVLNTRVTFRSAASPPLAVFRSCVRQVRTVRHPNHSKLGLHLSIIGSRWCFCSYGGS
IRSYSVQSLVDTVMEELEVLRKRRQLRVSNKLATSGELLQDKLEKRTLQKGLLLEFKKDT
GRVLLAVAQKPDGKKNWTVFDQNGVTTSIKPQQITFIVPGIEDFDHTQISDFIQRAQSNL
DPALLEFAWIELLEKGKSVTIEQLAEMIFGSTEPLESYCAHLLLSNDDVYFTVLETKGPF
SLYGPRPAVQVEELLQKKHAKELAEREFHEFMQLVKSAKGMPPHAKPSKSSWRSEEKIWH
RIGSLEAYAIDDFKNDDQRKTAGMILKEMGLSKTSAAALNLLIDIGYFPVHVNLDLLKYS
IHTDYPDRVLAAAGSLLSESYDDLDVNVRLDLTHLKVYAIDVDEADELDDALSATRLQDG
RIKVWIHVADPTSLVRPGSIIDKEAMKRGTSIFLPTATYPMFPEKLAMEGMSLKQGKPCN
AVTVSVILRPDGSIAEYSVDNSIIKPTYMLTYESASELLLLNLEEEIELKILSEAGALRF
RWRQQQGAIDTATLETRIKVANPDDPEPLIRLYVEDQSDPAMRLVSEMMILCGEVMATYG
SCNHIPLPYRGQPQSNIDTSAFAHLPEGPVRSSAIVRIMRAAEMDFSKPIRHGVLGLPGY
VQFTSPIRRYMDLLAHYQVKAFLRGDSPPFSAGQLEGIASLVNMSTRVVRKLCNSSLRYW
ILEYLRRQPKEKRFSALVLRFIKDRMAAILLVEVGLQASASMSIGVEVGDEVKVQVEEAH
PRDDILSLKEVSVAE
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgagtattgaacacccgcgtaacgtttcgctctgccgcgtcgccgccgctc
gccgtttttcggagctgtgtccgccaagtcaggaccgtgcggcatcccaaccactccaaa
ttagggcttcatctctcaattattgggtcacggtggtgtttttgtagctatggtggaagc
attcgaagttactcagttcaaagtcttgtcgacactgtcatggaggagctggaggtcttg
cgcaaacgccgccaactccgcgtttctaacaagttagcaactagtggggagcttctccaa
gataaattggaaaaacgaacactgcagaaagggttgctgctggagttcaagaaagacacc
ggaagggtattgctggctgttgctcagaaacctgacggcaagaagaactggacggtcttt
gatcagaatggtgtcacaacctccataaaaccacaacaaataacatttattgttccgggt
attgaggactttgaccatacacagatatcagacttcattcagagagctcagagtaacttg
gatccagcactactcgagtttgcatggattgagctgcttgaaaagggcaagtcagtaact
attgagcaactagctgagatgatttttggtagtacagagccccttgagagctattgtgcc
catttactgctgtcaaatgatgatgtttacttcacagttctggagacaaaaggtcctttc
tctctatatggtcctcgacctgctgttcaggtggaagagcttcttcaaaaaaagcatgcc
aaagaattggctgaaagggagtttcatgagtttatgcagttagtgaaatctgccaaagga
atgcctccacatgctaaaccctcaaagtcttcgtggagaagtgaagagaaaatttggcac
agaattgggtctcttgaagcttatgctattgatgatttcaagaatgatgaccaaaggaaa
actgctgggatgattctaaaagagatggggctatcaaaaacttcagcagcagccctaaat
ctactcatagacattggctacttccctgtacatgtcaatcttgatttattgaagtacagc
attcacactgattacccagacagggttttagcagctgctggaagcctgttatcagaatcg
tatgacgaccttgatgtgaatgtcagattagatttgacccacttgaaggtttatgccatt
gatgttgatgaggctgatgagcttgatgatgcactgagtgctacaaggcttcaagatggt
cgaattaaggtttggatacatgttgcagacccaacgagcttagttcgacctggaagcata
atagacaaagaggcaatgaaaagaggaacttccatatttttaccaactgcaacctatcct
atgtttcctgagaaattggcgatggaaggcatgagtctgaagcaaggaaaaccctgcaat
gctgtaacagtatctgttatactgcgacctgatggaagtattgcagaatattctgtggac
aattccataatcaaaccaacttacatgctgacatatgagagtgcatcagagctccttctt
ttgaatctggaagaggagattgaattgaaaattctgtcagaggcaggtgcgctgcgattc
agatggcggcaacaacagggtgcaatagacacggccacattagaaacacgaatcaaggtt
gcaaatccagatgatccagagcctttgattagactatatgttgaagaccagtcagatcct
gctatgcgacttgtatctgagatgatgatcctgtgtggggaagttatggccacttatggt
tcttgtaaccacatcccattaccatatagggggcagcctcaatcaaatattgatacatca
gcatttgcccatcttcctgaaggacctgtgaggagttcagcaattgttagaataatgcgg
gcagctgagatggatttcagtaagcctatccgtcatggggttctaggacttcctggctat
gttcagtttacatctcccatccgaagatatatggacctccttgctcattaccaggtaaaa
gcatttcttagaggtgattctcctcctttctcagctggtcaacttgaaggaattgcatct
ttagtaaacatgagcacccgagtagtcaggaagctttgcaacagcagtctacggtattgg
atattggagtatttaagacggcaaccaaaagagaaaaggttttctgctttggtactcaga
tttattaaagataggatggccgcaatactcttggtggaggttggacttcaagcttctgcc
tcaatgtccataggtgtagaggttggtgacgaagttaaagttcaagtggaagaagctcat
ccacgggatgatattctctctctcaaagaggtttcagtggcagaatga
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