KEGG   Coffea arabica (coffee): 113694174
Entry
113694174         CDS       T11342                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113694174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113694174
   03041 Spliceosome [BR:carb03041]
    113694174
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     113694174
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113694174
Spliceosome [BR:carb03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    113694174
SSDB
Motif
Pfam: RRM_1 RRM_Nup35 RRM_7
Other DBs
NCBI-GeneID: 113694174
NCBI-ProteinID: XP_027068840
UniProt: A0A6P6SSR5
LinkDB
Position
6c:15358714..15365656
AA seq 351 aa
MEEIKKRKLDQLGNGKFDLNLSQPTSLTLSLSSSSSASVEELRTLLEPLAKPQLTDLLVK
LGFQYPFIAEEIRSVARADPALRKLFVRGLSWNTTSETLCAAFEEHGEIEEGAVIADKAT
GKSRGYGFITYKDMESAQRALKAPSKMIDGRMAVCNLACEGLSSSSTTPDQAQRKLYIGS
LSPETTSEMLLSFFAKNGEIEEGSVAYDKETNRSRGFGFVTFKTVEGAKRAIDDPQKMLG
GRNITVKLADNHKGKVMHTQLPSPIVPVPVGLASAYPPPHNVHSGSGNPVGYAYPQPLAA
YPGTAYSSPPVVGAGAYPGQSPTSYPQFGHKKDPPTPPSALGGYPYYMPKQ
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggaggagataaagaagcgaaagctggaccaattgggcaacggaaaattcgatctgaat
ttatcacaacccacttcgctgactttatctctgtcttcctcttcatctgcatcagtagaa
gagctgcgcacgctgcttgaaccgttagccaagcctcaactgactgacctcctagtcaaa
ctagggttccaatatccttttattgctgaagaaattagaagtgttgcaagagcagatcca
gcccttcgaaagctttttgttcgtggtttatcctggaatactacttcagagaccttgtgt
gctgcatttgaagagcatggagaaattgaagagggtgctgtaatagctgacaaagctaca
ggaaaatcacgtggctatggtttcatcacatacaaagacatggagtcagctcaaagagct
ttaaaagcgccaagcaaaatgattgatggtcgcatggctgtctgtaacctagcctgtgag
ggcttgagcagctccagcactacacctgatcaggcccagagaaagctctatattggtagt
ttgtcaccggaaactaccagtgaaatgctactgagcttctttgcaaagaatggtgagata
gaagaaggttcagtggcatatgacaaggaaacaaacagatcacgtggttttggctttgtt
actttcaaaactgtggaaggtgcaaagagagctatagatgatccacaaaagatgcttggg
ggaagaaatataactgtgaagcttgctgataaccacaaaggcaaagttatgcacacacag
ttaccatcaccaattgttccagtacctgttggtttggcttctgcataccctccccctcat
aatgttcattctggctctggaaatccggttggatatgcttatcctcaaccattggcagca
tatcctggtactgcatactcaagtccacctgtagtaggagctggtgcatacccaggccaa
tcaccgacttcgtatccccagtttggtcataagaaagatcctccaactccaccttcagca
ctaggagggtacccgtattacatgccaaagcaatga

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