KEGG   Coffea arabica (coffee): 113694190
Entry
113694190         CDS       T11342                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113694190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carb03021]
    113694190
Enzymes [BR:carb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     113694190
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     113694190
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF6815 zf-Sec23_Sec24
Other DBs
NCBI-GeneID: 113694190
NCBI-ProteinID: XP_071911978
UniProt: A0ABM4UXH3
LinkDB
Position
1e:39458654..39466906
AA seq 1212 aa
MDVPDARKDPGIGSSKDKLSDETLLMDIDDIDFDDFDDMLNSVTLQELGEDFLKKFCKKA
ATAFFEQYGLISHQINSYNNFVKYGIQQMFDSVGEIVVEPGFDPSKRGDGEWKYASIKFG
KVILDKPDFWTGDKFFGDGGKEYLKFLPCHARLQSMTYSARIKVETHVQVYTKKLLASDK
AKTGRAVHIENECEKEEKREVIIGRLPVMVRSDLCWMNGVEKDDCEFDHGGYFIIKGAEK
TFVAQEQICLTRLWLSCVPCWTVSYRPVARRKRVYLKLVDESKFANLIGGQRVLSVYFVI
AEMPVWILFFALGASSDREVVDLIDLNIEDTKIANILTGSIYYADTKFEDADLKCKGGFR
KGRNALDYVQMLLNNCKYPPAESVEECISNLLFPNLTGFKQKACFLGYMVKCLLEAYTGR
RKVDNRDDFRNKRLELASELLERELKVHLKHVERCMVKAMQRDLYGDRSLQSIEHYLDAS
IISNGLSRAFSTGAWSHPYKKERVSGVVASLRRTNPLQMTADMRKTRQQVSYIGKVGDAR
YPHCSHWGKICFLSTPDGENCGLVKNLASLGLVSTKVLEPLIERLLNCGLKQLVDHASSL
VHGEHKIFLDGDWIGTCKDSAFFVAELRSKRRNKEIPPQVEIKRDEHHGEIRIFSDAGRV
LRPLLVVENLKKIKDLKGENYSFQSLLDKGIIELIGPEEEEDCPTAWAIDYLYTGNRENP
SMKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRVDTNI
HQLYYPQRPLFCTMLSDCLWKPAYPRHRGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVM
NRASLERGMFRSEHIRSYKSDIDEKHNLGKKHKSEDEVKFGKMPSKIGRVDSLDDDGFPF
IGASLQTGDIVIGKYSESGADHSVKLKHTERGMVQKVVLSADDDGKNFAVVSLRQVRSPC
LGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPSRQTPGQLLEAALAKGI
ALGGVQKYATPFSALSVDAVTDQLHRLGFSRWGNERVYSGRTGEMIHSMVFMGPTFYQRL
IHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAASNLHERLFTLS
DSSEMHICRKCKSMANVIQRSVFGGRKIRGPFCRFCESAEDIVKVNVPYGAKLLSQELFS
MGISLKFDAELC
NT seq 3639 nt   +upstreamnt  +downstreamnt
atggatgtgcctgacgccagaaaagatccaggaattgggagcagcaaagataagttatca
gacgaaactttactgatggatattgatgacattgactttgatgatttcgatgatatgctg
aattctgtcaccctacaagaattgggtgaagattttttgaagaaattttgcaagaaggca
gcaactgccttctttgaacagtatggtctaattagtcatcagattaattcatacaacaat
tttgtcaagtatgggatccaacaaatgtttgactctgttggagagattgtggttgagcca
gggtttgacccttccaagagaggtgacggcgaatggaaatatgcctccataaagtttggc
aaggtcatccttgataagccagacttttggacaggcgacaagttctttggagatggtgga
aaagagtacctgaagtttcttccttgtcatgctaggcttcagagcatgacttattccgct
aggataaaagtggagactcatgttcaggtttacaccaagaagcttctagcaagtgacaag
gcaaaaactggaagggcagtacatatagagaatgagtgtgagaaggaggagaagagagag
gtcataatagggaggcttcctgttatggtgagatccgacttatgttggatgaatggagtt
gaaaaggatgattgcgaatttgaccatggtggttactttattataaagggtgctgaaaag
acatttgttgcacaggagcaaatttgcttgacaagactttggctctcatgtgtcccgtgc
tggactgtttcttaccgtccggttgcaagaaggaagagagtctatctgaagctagttgat
gaatcaaaatttgcaaatctcatcggaggacaaagggttctttctgtttattttgtcatt
gccgaaatgcctgtatggatactatttttcgcccttggtgcatcttctgatagagaggtg
gtagatttgattgatctgaacattgaagacaccaagattgctaatatactaactggctcg
atttattatgctgatactaaatttgaggatgctgatcttaaatgtaaaggaggcttccgt
aaaggcaggaatgctctagactatgttcagatgcttctgaataactgcaaataccctcct
gctgagtccgtggaagaatgcatcagcaatctactgtttccaaatttaactggattcaaa
cagaaagcctgcttccttgggtatatggtgaagtgtctgttggaagcctatactgggcga
agaaaagttgacaaccgggatgacttcagaaacaagagattggagttggcttctgagcta
ctggagagggagctgaaagtacacctcaagcatgttgagaggtgtatggttaaggctatg
caaagagatctctatggagatcgtagcctgcagagcattgaacattatctggatgcatca
atcatttcaaatggtctctcaagggcattttcaacgggagcatggtcccatccttataag
aaggaaagggtttctggagttgtagcatcccttcggcgaacaaatccattgcagatgact
gctgacatgaggaaaacacggcagcaggtttcatacatcggaaaagttggtgatgctaga
tatccgcactgttcacactggggaaagatatgcttcctctctactccagatggagaaaat
tgtgggttggttaaaaacttggccagcttgggtcttgtcagcacaaaagtgttggaacct
cttattgaaagattgctcaattgtggtctgaaacaattggtagatcatgcttcatcattg
gtacatggagagcacaagatatttttggatggggattggattggaacatgcaaggattct
gctttttttgtagcagaattaaggagtaagcgtcggaacaaggagatcccaccacaggtg
gaaattaaaagagatgaacatcatggagaaattcgtatattttctgatgctggaagggtt
cttcgtcctctcctagtagttgagaatctgaaaaagatcaaagatttgaaaggggaaaac
tattcatttcagtctcttttggacaaaggaataattgaacttattggacctgaagaggaa
gaagattgtccaactgcttgggcaattgactatctgtatactggaaacagagagaaccct
tccatgaaatacacacattgtgaactggacatgtcatttttacttggtctaagctgtgga
ataatcccatatgcaaaccacgatcacgcacgaagggtcctgtaccaatctgagaagcac
tctcagcaggccattgggttttccaccacaaacccaagtatcagggttgatacaaatatt
catcaattgtattatccccagaggccattgttctgtacaatgctttcagattgtctgtgg
aagcctgcctatcctcgtcatagaggaatgttgccacgacctgaatactataatggacaa
tgtgctatagtggcagtcaatgttcaccttggttacaatcaggaggattccttggtgatg
aatcgtgcttcactagagcgtggcatgttccgctccgagcatataagaagctacaagtca
gacatagatgagaagcataacttaggaaagaagcataagtctgaggacgaggtaaagttt
ggaaagatgccaagtaaaatcgggcgcgttgacagccttgatgatgatggtttcccattc
atcggtgctagccttcaaactggtgatatagtcatcggtaagtattcagaatctggggct
gatcatagtgtgaaactgaagcacactgaaagaggcatggttcagaaggttgtactgtca
gctgatgatgatggcaagaactttgctgtggtatctctgaggcaggttcgttctccatgt
ctgggtgacaaattttcaagcatgcatggacagaagggtgttctgggtttcctggaatcc
caggagaattttccgtttactgcacaagggatagttccagatattgtgattaatccacat
gcatttccttcaaggcaaactcctggacaactgttagaggctgctttggctaagggaatt
gctctaggaggtgtgcagaaatatgccacacctttttctgctttatctgttgatgctgta
acagaccaactccacaggcttggattttcaaggtggggaaatgaaagagtgtacagtggt
cgaacaggtgaaatgattcattccatggttttcatgggtccaacgttctatcagcgcctt
attcatatggctgaagataaagtcaaatttcgaaatactggacccgtccatccactcact
cgtcagccggtggcagacaggaagcgatttggtgggataaaatttggtgagatggagcga
gattgccttatagcccatggtgctgcatccaatctgcatgaacgcctcttcactctcagc
gattcctcagagatgcatatctgtcgcaaatgcaagagtatggcaaacgtaatccaaagg
tcagtgtttggtgggcggaagattcgtggccctttttgccggttctgtgagtctgctgaa
gacattgttaaggtgaatgtgccttacggcgccaagttgctcagccaggagcttttcagc
atgggcatatctctgaagtttgatgccgagttgtgttga

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